clean.
Jari
Micha Bayer wrote:
-Original Message-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Jari Häkkinen
Sent: 30 November 2006 15:42
To: BASE ML
Subject: Re: [base] Offline files
There is a possibility to get access to the subversion repository
-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 18:36
To: BASE ML
Subject: Re: [base] Offline files
It looks like I let the cat out of the bag on this one...
Some discussion among the community would be good to establish
:[EMAIL PROTECTED] On Behalf Of Micha Bayer
Sent: 30 November 2006 09:52
To: BASE ML
Subject: Re: [base] Offline files
That sounds like a hell of a lot more work than what I have done so far
:-)
My first shot at this has been quite basic and it only creates new
RawBioAssays and a single
Micha Bayer wrote:
So am I right in thinking that if I change this to the following...
public class ZipFileImporter extends AbstractPlugin implements
InteractivePlugin, AutoDetectingImporter
{
private static final SetGuiContext guiContexts =
PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 18:36
To: BASE ML
Subject: Re: [base] Offline files
It looks like I let the cat out of the bag on this one...
Some discussion among the community would be good to establish
=
-Original Message-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 18:36
To: BASE ML
Subject: Re: [base] Offline files
It looks like I let the cat out of the bag on this one...
Some discussion among
] On Behalf Of Bob MacCallum
Sent: 29 November 2006 18:36
To: BASE ML
Subject: Re: [base] Offline files
It looks like I let the cat out of the bag on this one...
Some discussion among the community would be good to establish what we
want
from a bulk loader
] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 18:36
To: BASE ML
Subject: Re: [base] Offline files
It looks like I let the cat out of the bag on this one...
Some discussion among the community would be good to establish what we
Nicklas Nordborg writes:
Giovanni Coppola wrote:
Hi everybody,
I have two questions:
1) is there a way to download images or raw data files in batches?
No.
yes but there is a zip file unpacker (in BASE 2)
I haven't used it, but doesn't this cut down on the GUI clicking if you
The zip up-loader is meant to be used for uploading bulks of files, and
is working well. For retrieving files from the server there is no batch
support.
Jari
Bob MacCallum wrote:
Nicklas Nordborg writes:
Giovanni Coppola wrote:
Hi everybody,
I have two questions:
1) is
What does mean to move offline ?
Is it the same as: Delete THEN Empty trash ?
--
Emmanuel COURCELLE[EMAIL PROTECTED]
L.I.P.M. (UMR CNRS-INRA 2594/441) tel (33) 5-61-28-54-50
B.P.52627 - 31326 CASTANET TOLOSAN Cedex - FRANCE
--
Emmanuel Courcelle wrote:
What does mean to move offline ?
Is it the same as: Delete THEN Empty trash ?
No it is not. A file exists in two places. As an entry in the database
and as a file on the disk.
The Move offline feature is used when you want to delete the file on
disk but keep the
-Original Message-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 10:15
To: BASE ML
Subject: Re: [base] Offline files
[...]
At some point, someone will come up with a bulk loader which will
batch/bulk/mass upload
:
-Original Message-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Bob MacCallum
Sent: 29 November 2006 10:15
To: BASE ML
Subject: Re: [base] Offline files
[...]
At some point, someone will come up with a bulk loader which will
batch/bulk/mass upload
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Micha Bayer
Hi Micha,
I have just finished writing one. The user uploads a zip file, a new
directory is created in the user's raw data directory (with the same name
as the zip file) and the files are
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file/directory
to import. If the zip file is not already uploaded the user will have an
Hello everybody,
thank you for you replies. I'll transform my questions in suggestions:
1) data batch downloading would be great, since this is a pretty
basic task, many experiments have 30+ arrays, and right now the user
needs two clicks for each.
2) it is extremely misleading, to have a
Häkkinen
Sent: 29 November 2006 14:14
To: BASE ML
Subject: Re: [base] Offline files
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file
Jari Häkkinen wrote:
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file/directory
to import. If the zip file is not already
Ah, even better ;-)
Nicklas Nordborg wrote:
Jari Häkkinen wrote:
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file/directory
to
Micha Bayer wrote:
I am just talking to my boss about code ownership issues but I can
probably offer up my stuff one way or another, and people can then
either cannibalise it and turn it into a plugin, or adopt it (or a
modified version) into the core etc etc -- happy with any solution
Micha Bayer wrote:
Hi Jari,
That sounds perfectly reasonable when you put it like this, but
I was put off going down that route by a post to the list from
Nicklas
http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg00228.html)
where he says that it is best to not use a
Micha Bayer wrote:
Hi Jari,
That sounds perfectly reasonable when you put it like this, but I was put off
going down that route by a post to the list from Nicklas
(http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg00228.html)
where he says that it is best to not use a
-Original Message-
From: [EMAIL PROTECTED] [mailto:basedb-users-
[EMAIL PROTECTED] On Behalf Of Nicklas Nordborg
Sent: 29 November 2006 14:40
To: BASE ML
Subject: Re: [base] Offline files
Jari Häkkinen wrote:
Hi all,
Just a thought, I think the best choice to trigger
: [base] Offline files
Jari Häkkinen wrote:
Hi all,
Just a thought, I think the best choice to trigger a large import like
this is to create a plug-in instead of adding extra tabs to the file
browser. The plug-in should start by requesting the zip file/directory
I think a bulk importer is essential. We have found that all users enter
data in bulk. They set aside some time to enter a set of data, usually from
the same experiment. Having the user enter each chip individually leads to
user frustration and clerical errors.
We created a bulk uploader which
Hi everybody,
I have two questions:
1) is there a way to download images or raw data files in batches?
2) while I was trying that (to download more than one file at once),
in the 'Files and Directories' tree, I accidentally moved Offline
some files, and now I don't seem able to download them
Giovanni Coppola wrote:
Hi everybody,
I have two questions:
1) is there a way to download images or raw data files in batches?
No.
2) while I was trying that (to download more than one file at once),
in the 'Files and Directories' tree, I accidentally moved Offline
some files, and now
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