Ok, I guess I'm missing something in the configuration of the plugin, for all the plugins associated with the Base1PluginExecuter. If i simply create the plugin under the Base1PluginExecuter but then not configure it, then I am given the option under the drop down to run it when attempting "Run an analysis plugin" but it does not function as it hasn't been configured. But once i do configure it, with the proper file and path to the run command. the option to run the plugin in the drop down under run an analysis plugin disappears as an option to run.
Thanks again Thomas ________________________________________ From: Nicklas Nordborg [nick...@thep.lu.se] Sent: Thursday, March 10, 2011 4:01 PM To: basedb-users@lists.sourceforge.net Subject: Re: [base] Base 1.2 plugin - Virtual Array -1.1 On 2011-03-10 20:58, Jari Häkkinen wrote: > Also, Virtual array works only on 2-channel data. I was never involved in the development of this plug-in so maybe I am missing something obvious.... I had a quick lock at the code (http://baseplugins.thep.lu.se/browser/plugins/base1/se.lu.onk.VirtualArray/trunk/src/virtualarray/VirtualArray.java) and I can't see anything in it that depends on the number of channels. As far as I can tell it is simply copying the input intensities to the output without change. The only difference is that it assigns negative position numbers. Actually I don't see any point in running the VirtualArray at all. All intensity data afterwards will be exactly the same as it was before. The only change is that position numbers are different, and as a side-effect of that the connection to raw data is lost. But... maybe I am missing something obvious... Anyone knows more about this? In any case, since there is not any dependency on the number of channels in the code, it should be safe to change 'minChannels 2' to 'minChannels 1' in the pluginVirtualArray.base file. Or (easier) directly by reconfiguring the plug-in in the web interface. There should be an option for this setting in the second step (leave the file field empty in the first step). /Nicklas ------------------------------------------------------------------------------ Colocation vs. Managed Hosting A question and answer guide to determining the best fit for your organization - today and in the future. http://p.sf.net/sfu/internap-sfd2d _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net ________________________________ UT Southwestern Medical Center The future of medicine, today. ------------------------------------------------------------------------------ Colocation vs. Managed Hosting A question and answer guide to determining the best fit for your organization - today and in the future. http://p.sf.net/sfu/internap-sfd2d _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
