Re: [Bioc-devel] DataFrame conversion

2024-03-13 Thread Ramos Perez, Marcel via Bioc-devel
Hi Daniel, Thanks for posting. Hervé has asked on the R-devel mailing list: https://stat.ethz.ch/pipermail/r-devel/2024-March/083265.html I don't think you will have to do anything in your package. Once fixed, the messages will go away. Best regards, Marcel On 3/13/24 5:09 PM, Daniel

[Bioc-devel] DataFrame conversion

2024-03-13 Thread Daniel Schulz
Dear all, I am maintaining the imcRtools package. Since Monday we have a build error on the development version. Most of the errors are attributed to test functions which fail now and can be attributed to the below problem. It seems that currently with R 4.4 and Bioconductor 3.19 the following

Re: [Bioc-devel] Failed to activate account for Bioconductor git credentials

2024-03-13 Thread Małgorzata Oleś
Dear Lori, the issue described by Ning seems to be the same as I am experiencing right now (new machine + public key in github updated + Bioconductor Git Credentials not recognising my email + g...@git.bioconductor.org: Permission denied (publickey)). Could you assist me here, please? Best

[Bioc-devel] xcms error with R CMD check "checking loading without being on the library search path"

2024-03-13 Thread Rainer Johannes
Dear all, we're having some rather strange errors with R CMD check on the xcms package recently: it will fail with this warning (which then becomes an error): ✔ checking whether the namespace can be loaded with stated dependencies (5.9s) ✔ checking whether the namespace can be unloaded

Re: [Bioc-devel] AnnotationHub corrupted cache on nebbiolo1

2024-03-13 Thread Matteo Tiberti via Bioc-devel
Hi, I can confirm it did clean up – thanks for your help! Cheers Matteo Tiberti Danish Cancer Institute Strandboulevarden 49 DK-2100 Copenhagen Telephone: +45 35 25 73 07 – a part of the Danish Cancer Society [An image showing the Danish Cancer Society's name and logo called the bow in red