Re: [Blue-obelisk] reported bugs in BODR 4

2006-12-12 Thread Egon Willighagen
On Friday 01 December 2006 08:58, Carsten Niehaus wrote: Conclusion: I could remove the familiy-attribute from the actinides and remove the whole dataset of acidity/basic/neutral/amphoteric. This would be better then having (possibly) wrong data IMHO. Please fo ahead. Egon -- [EMAIL

Re: [Blue-obelisk] Blue Obelisk ChemoInformatics Data Repository?

2007-01-07 Thread Egon Willighagen
On Sunday 07 January 2007 21:58, Stefan Kuhn wrote: Am Sunday 07 January 2007 22:07 schrieb richard apodaca: In the BO paper (JCIM 2006, 991), ref. 30 lists: http://www.blueobelisk.org/repos/blueobelisk OK, after playing with the Apache cond file a bit more, I got this URL working

[Blue-obelisk] Fwd: [CHMINF-L] RSC Publishing launches Project Prospect

2007-02-01 Thread Egon Willighagen
Noel, on the bright side: -- Forwarded Message -- Subject: [CHMINF-L] RSC Publishing launches Project Prospect Date: Thursday 01 February 2007 15:13 From: Valerie Simpson [EMAIL PROTECTED] To: [EMAIL PROTECTED] Posted on behalf of Richard Kidd February 1, 2007 Dear

Re: [Blue-obelisk] A BODR project on SF?

2007-02-07 Thread Egon Willighagen
On Wednesday 07 February 2007 17:30:41 [EMAIL PROTECTED] wrote: Overall, I think that SF listing is a plus for BODR. I have seen several and positive only messages, so going ahead with this. Will report when the bodr.sf.net is available. Egon -- Radboud University Nijmegen

Re: [Blue-obelisk] Google Starts Summer of Code 2007

2007-03-12 Thread Egon Willighagen
Hi all, On Friday 16 February 2007, Geoffrey Hutchison wrote: I think we should apply -- we obviously have nothing to lose, and a lot to gain. I applied with Bioclipse and the CDK yesterday, and via the KDE there is some chemistry involved too. Geoff, did you apply with OpenBabel? Anyone

Re: [Blue-obelisk] Re: Re: Blue Obelisk Firefox toolbar

2007-03-20 Thread Egon Willighagen
On Tuesday 20 March 2007, Noel O'Boyle wrote: Will do - it would be nice to have a central location for Chemistry-related Greasemonkey/Javascript scripts, so that next time I won't overlook work that you or someone else has already carried out. Maybe somewhere on the BO wiki. Yes, that would

Re: [Blue-obelisk] CML RSS

2007-05-25 Thread Egon Willighagen
Peter wrote: Had a chance to play with the latest Bioclipse and although there were bugs (which we may sort out tomorrow) the OPML tool is able to feed CrystalEye stuff to Bioclipse and display it. One thing that would already help a lot is a proper XML editor. The Eclipse Web Tools Package

Re: [Blue-obelisk] Relocation of mailing list to Google Groups + rant

2007-05-27 Thread Egon Willighagen
On Wednesday 16 May 2007, Sanford Dickert wrote: I vote against this and the reasons are as easy: Google (groups) has nothing to do with Open Source, Data or Standards and their services also have technical problems (I don't want to blame them, but that's the situation). I would very

[Blue-obelisk] BODR SVN moved to bodr.svn.sf.net

2007-05-29 Thread Egon Willighagen
Hi all, the SVN for BODR has now been moved to bodr.svn.sf.net. CIA commit messages got to #cdk. Egon -- [EMAIL PROTECTED] Blog: http://chem-bla-ics.blogspot.com/ GPG: 1024D/D6336BA6 ___ Blue-obelisk mailing list

Re: [Blue-obelisk] Chemical blogspace move

2007-06-14 Thread Egon Willighagen
On Jun 14 2007, Egon Willighagen wrote: Ah, no. Sorry about that. But the fix is easy (I hope you read this in time... it's 7:28 here, so that should give you 92 minutes...): find all occurrences of To do that in FireFox, choose Tools - Greasemonkey - Manage Script. Then click the relevant

[Blue-obelisk] Two summer-of-code like projects for Bioclipse and Jmol

2007-06-16 Thread Egon Willighagen
Hi all, I just received confirmation that Bioclipse and Jmol both have a summer student assigned in a Dutch variant of the Summer of Code. Details will follow in my blog later this weekend. Egon ___ Blue-obelisk mailing list

Re: [Blue-obelisk] Chemical blogspace move

2007-06-17 Thread Egon Willighagen
On Jun 14 2007, Egon Willighagen wrote: Is the BO greasemonkey working? I would like to demo it tomorrow at 0800 - please let me know if not - and don't worry... Ah, no. Sorry about that. But the fix is easy (I hope you read this in time... it's 7:28 here, so that should give you 92 minutes

Re: [Blue-obelisk] Mailing list move?

2007-06-17 Thread Egon Willighagen
On the subject of moving Blue Obelisk services... Let's first just get everyone using the new mailing list. Can someone (Egon?) send me the address list for the current list? We can import that into the new SourceForge list and switch. Christoph is already working on that... If anyone can

Re: [Blue-obelisk] RE: Blue-obelisk wiki redesign and planet BO

2007-06-18 Thread Egon Willighagen
I also find it rather intriguing that the Blue Obelisk manifesto is published in a journal which only subscribers (aka da club) can access. The Blue Obelisk - Interoperability in Chemical Informatics, J. Chem. Inf. Model., 2006, 46, 991-998. http://dx.doi.org/10.1021/ci050400b Is there any

[Blue-obelisk] RSS extension...

2007-06-19 Thread Egon Willighagen
Noel, I wanted to experiment with an RSS extension [1], so that the Planet Blue Obelisk feed can be put on the front page, but discovered that the extensions/ dir is RO for group members. Can you please fix that? Egon 1.http://www.mediawiki.org/wiki/Extension:GISWiki/RSS