Continuing our journey down the scenic A65, CCP4 version 6.1.13 is available
for download. This updates clipper to 2.1 and brings in buccaneer 1.4.
Many thanks to Rafael Navaza, Takanori Matsuura, Kevin and others for ironing
out the wrinkles.
Have fun.
CCP4 core team
I would very much appreciate if you can post to your website the job
advert included in this email below.
Please let me know if you require any further information.
Many thanks,
Matilda Katan
THE INSTITUTE OF CANCER RESEARCH
Section of Cell and Molecular Biology
Chelsea, London
Dear All,
Re the python script to compare a unit cell to those in the PDB.
Can you give instructions on how to run your script?
put the script and the gunzipped datafile somewhere in your PATH, edit the
script to point to the datafile.
Run the script with the 6 cell dimensions on the command
Is there information somewhere on what is new or modified in Buccaneer 1.4 (any
new keywords?) - could not find it?
Thanks!
Interesting!
I wrote a tcsh shell script to do the same thing, but using the reduced
cell from the CCP4 program tracer instead of the given unit cell.
This reduced cell is generally the bottom P1 choice you get from
autoindexing, and using it as the comparison space takes care of all the
Dear CCP4bbers,
On September 4, 1980, Prof. Dagmar Ringe and Prof. Greg Petsko of MIT
embarked on a scientific collaboration, and the scientific community
has never been the same. Now, 30 years later, the members of the
Petsko-Ringe lab are holding a symposium on June 18 and 19, 2010 at
TargetDB performs this type of analysis for structures deposited by
structural genomics projects.
Tabulations of novel depositions can be found at
http://targetdb.pdb.org/Metrics/MilestonesTables.html.
The data from which these statistics were calculated from sequence
clustering performed
Hi,
Can anyone tell what's going wrong. Pointles failed with the following
error message. Your suggestion is well appreciated.
* Information from CCP4Interface script
***
The program run with command:
Many thanks for all the responses, I briefly summarized them as follows:
1. Birefringence-on glass coverslip, dim the room and set the polarizers
exactly to extinction, then check if the precipitate glows (exception: cubic
space group crystal).
2. Streakseeding-if something grows along the
