Re: [ccp4bb] Phase separation and membrane protein crystallization

2012-12-18 Thread Van Den Berg, Bert
Lin, consider yourself lucky if you only have one problem...;-) regarding your question, poor reproducibility is a common problem with membrane protein crystallography and is most likely caused by different amounts of lipids copurifying with your protein. If you want to avoid it (may not be

[ccp4bb] PEG refinement

2012-12-18 Thread Albert Guskov
Dear all, is there any consensus about PEG refinement? I'm currently refining several structures with a lot of bound PEG molecules. However I'm completely confused now which ligand description to use. For example, a search in Hic up database reveals 12 possible descriptions for PEG, 5 of them used

Re: [ccp4bb] PEG refinement

2012-12-18 Thread Boaz Shaanan
Hi, I usually pick up the one that fits best the map (there are several PEG monomers in the ccp4 monomer library to choose from). You should bear in mind that PEG's are a mixture of molecules, quite often floppy, so whatever fits best is the best choice. Good luck, Boaz Boaz

[ccp4bb] Position available at DESY: Protein Nanocrystallography

2012-12-18 Thread Thomas White
DESY, Hamburg location, is seeking a Scientist for Protein Nanocrystallography (f/m) DESY is one of the world’s leading centres for the investigation of the structure of matter. DESY develops, runs and uses accelerators and detectors for photon science and particle physics. The Center for

Re: [ccp4bb] PEG refinement

2012-12-18 Thread Nicholas Keep
I doubt there is a consensus on this. Your PEG solution is a mixture of lengths of polymer and normally you can only see a small fraction of the PEG molecule. PEG400 will be between 8 and 10 ethylene glycols. Bigger PEGS probably vary more. My experience is that you can often only see