Re: [ccp4bb] The binding between disordered and ordered proteins

2013-10-24 Thread Carlos Kikuti
Hmmm… is it really (physiological-like) binding, or your protein A is aggregating/precipitating on the partner? Do you have a good negative control (a similar protein to which protein A should not bind)? Also, as a general rule, be careful about your detection method for the pull-down, don't

Re: [ccp4bb] Error with iMosflm 1.0.7 of CCP4 6.4.0 kit

2013-10-24 Thread Charles Ballard
Dear All the soon to be released update (via the update mechanism) will address this by applying the patch to imosflm.tcl. Charles Ballard CCP4 On 23 Oct 2013, at 23:35, Andreas Förster wrote: Hi David, I've just renamed the ipmosflm in $CCP4/bin to ipmosflm_new and then defined

[ccp4bb] Registration open - EMBO Practical Course on Computational Structural Biology

2013-10-24 Thread Gary Battle
Dear colleagues, We are pleased to announce that the 2014 EMBO practical course on Computational Structural Biology - from data to structure to function will be held at EMBL-EBI, 7th - 11th April, 2014. Now in its 5th consecutive year, this unique and highly popular practical course covers

[ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Tobias Beck
Dear all, I was just wondering if anyone has some information or references about the dimensions of the largest protein crystal ever grown? I am aware that for neutron protein crystallography one usually needs crystals with mm dimensions. I have found some information on crystallization under

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Frank von Delft
Very recently (last few months), 3x1x1mm monsters for neutrons. I think J. Crystal Growth. On 24/10/2013 16:33, Tobias Beck wrote: Dear all, I was just wondering if anyone has some information or references about the dimensions of the largest protein crystal ever grown? I am aware that for

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread William G. Scott
I remember seeing an approx (5mm)^3 haemoglobin crystal in the MRC LMB crystal growing room, and the nucleosome crystals there were almost as big in their longest dimension. Bill On Oct 24, 2013, at 8:33 AM, Tobias Beck tobiasb...@gmail.com wrote: Dear all, I was just wondering if anyone

[ccp4bb] Faculty Position in Structural Biology - Purdue

2013-10-24 Thread Mesecar, Andrew D
Dear Colleagues, I want to bring the following position to your attention: Faculty Position in Structural Biology Purdue University The Department of Biological Sciences and the Markey Center for Structural Biology at Purdue University invite applications for a tenure-track faculty position in

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Simon . Phillips
I once grew an oxymyoglobin crystal 1 cm long for neutron diffraction at Brookhaven. I was very proud of it, but when I got to Brookhaven I was told it was too big for the beam (!) so I had to use a much smaller one of only 8 mm**3 (Nature 292:81-82 (1981). I still have a few left over that

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Jrh
Dear Tobias, Take a look at http://dx.doi.org/10.1107/S0108767389012912 The ribonuclease crystal I used to measure the speed of sound, using laser generated ultrasound, was of volume 129 mm3 ie 7.7x6.2x2.7 mm . David Moss of Birkbeck College provided it. Best wishes, John Prof John R Helliwell

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread David Briggs
Following on from John's comment, when I did my PhD at Birkbeck in the early 2000s, one of David Moss's other PhD students (John Bond) grew some gigantic (1cm edges) crystals of things like HEWL Myoglobin, which he then (somewhat perversely) crushed to load into capillaries for powder diffraction

[ccp4bb] Double screen bug in Xquartz, Mac OS 10.9 (Mavericks)

2013-10-24 Thread Carlos Kikuti
This is just to inform that if you have a second screen plugged to your Mac and you want to use Mac OS 10.9, you should consider disabling the “Displays have separate Spaces” option, or you won’t be able to work with Coot (the window will keep hiding from you). This is not a Coot bug (and

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Victor Lamzin
Also following on from John's comment - back to the times of my PhD I was repeatedly growing crystals of bacterial formate dehydrogenase (80 kDa) of a size about 7x1.5x1 mm. I thought that was quite normal and did not even think of making a photo of 'just a protein crystal'. Victor

[ccp4bb] Call for proposals at ALBA Synchrotron - Deadline 4 Nov.

2013-10-24 Thread Jordi Juanhuix
Dear all, The MX beamline at the Alba Synchrotron (Barcelona), BL13-XALOC, is now open for user proposal applications. Worldwide institutes are eligible for beamtime, which is awarded upon peer-reviewed proposals. The beamline is included in the http://www.biostruct-x.eu/ Biostruct-X funding

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Derek Logan
Hi, Last spring I visited the Protein Crystallography Station at Los Alamos. On a shelf, in a capillary in a serious exhibition-quality glass dome, was a crystal of myoglobin some 50 mm**3, if I remember correctly. I was told it had been made by Benno Schoenborn some decades earlier and had

Re: [ccp4bb] largest protein crystal ever grown?

2013-10-24 Thread Jrh
Dear Tobias, There is also this one :- http://dx.doi.org/10.1107/S0021889801007245 In this study we had to use a smaller crystal than the largest ones available of 125mm3. They were a lovely rhombic dodecahedral crystal habit. Nb we only published details of the size of the one used. These

[ccp4bb] strange unit cell

2013-10-24 Thread 유상헌
Hi everyone, Recently I’ve got a protein crystal and I did indexing and scaling with a cubic space group (unit cell 104.115 104.115 104.115 90.0 90.0 90.0). But a Rmerge value was too high (around 0.5-0.6). So, I tried lower symmetry space groups and I successfully solved the structure with a