Hi Folks,
A xia2 user wrote in asking where to find
'observed criterion sigma(F)' and 'observed criterion sigma(I)'
in the xia2 logs (i.e. from Scala or Aimless or XSCALE)... I have no idea
what they are so will struggle to give a helpful answer ;o) and
surprisingly google was not a lot of use
Hi Graeme,
There was a CCP4BB thread about this quite recently (14th Nov 2013). I've coped
below responses from Edward Berry and Matthew Franklin.
SCALA AIMLESS have no sigma cutoffs, but TRUNCATE does. According to the
documentation, reflections with intensities less than minus 4 standard
Thanks Andrew, slight feeling of embarrassment now that this was a thread
two weeks ago (though this was off the bottom of the ccp4bb folder and did
not 'google' in my defense... I guess I was also looking in the wrong
place...)
Best wishes, Graeme
On 25 November 2013 11:15, Andrew Leslie
Dear colleagues,
the CCP4 Study Weekend - Diamond MX User Meeting programme is now available
at the following web site:
http://www.cse.scitech.ac.uk/events/CCP4_2014/UserMeeting.html
We hope that you will find the programme interesting and that we will
see you at the meeting which takes place
Hi, We have been maintaing a list of european (and a few outlying countries)
macromolecular crystallographers on the Web for ca. 10 years. This list is
updated annually and contains relevant addresses and emails ordered by
countries and labs. Since the list keeps growing and entails more
Hi all,
I have recently been trying to use the LIDIA ligand-viewer of Coot, which calls
cprodrg.
I am running CCP4 6.4.0 with all the latest updates on a Macbook Air (mid-2012
model) with OS X 10.9 installed and the latest nightly build of coot (r4833).
Unfortunately, when I run cprodrg
Dear All:
Many thanks for your comments and inputs!
Uma
On Sat, Nov 23, 2013 at 7:14 PM, Uma Ratu rosiso2...@gmail.com wrote:
Dear All:
I use Coot to check water molecules in my model.
Most of them are in good coordinates for water.
Some of these waters have unusual coordinates.
For
Dear All,
CCP4 Core Group is aware of the issue and is looking into it. Once fixed, new
cprodrg will be put into update.
Thank you,
Eugene Krissinel
On 25 Nov 2013, at 13:46, Oliver Clarke wrote:
Hi all,
I have recently been trying to use the LIDIA ligand-viewer of Coot, which
calls
Dear all,
I am working on a membrane protein covalently bound to a molecular
antanna: it is known that this molecule binds to lysine residue but I do
not know how many and which lysine residues it binds. 20 diffraction
datasets of this protein-ligand complex have been obtained and now, I
Hi Danilo,
I'll answer you on the Phenix mailing list!
All the best,
Tom T
On Nov 25, 2013, at 8:14 AM, Danilo Belviso wrote:
Dear all,
I am working on a membrane protein covalently bound to a molecular antanna:
it is known that this molecule binds to lysine residue but I do not know how
Please check the announcement for 2014 ESRF Users' Meeting Associated
Structural Biology Workshop.
Invitation to the 2014 ESRF Users' Meeting Associated Workshops to meet and
discuss with fellow users, get inspired, establish new scientific
collaborations and learn about future opportunities
Dear All
as Eugene says this will go into an update, but until then there is a probable
fixed binary at
ftp://ftp.ccp4.ac.uk/ccp4/6.4.0/updates/osx/cprodrg
Charles Ballard
On 25 Nov 2013, at 14:03, Eugene Krissinel wrote:
Dear All,
CCP4 Core Group is aware of the issue and is looking
I would note that the cutoff in HKL must be a somewhat different statistic than
that
in truncate, since the former is applied to individual measurements
(observations?)
before averaging, while truncate normally never sees the individual measurements
but only the averages.
Ed
Andrew Leslie
*Postdoctoral Fellow – structural biology *
*Cell Biology and Biophysics Unit, National Institutes of Health*
A postdoctoral fellow position is available in the Cell Biology and
Biophysics Unit headed by Dr. Antonina Roll-Mecak to work on structural
studies of microtubule regulators. Research
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