I would say the guess is a wrong one. SS superposition is used only as a seed
for further refinement. SSM (superpose) outputs all residues (not all atoms)
and marks those which get aligned. Then, superposition is done using aligned
residues. Alignment != superposition.
As to LSQKAB, it's pure
See: http://www.wwpdb.org/news/news_2014.html#06-May-2014
Even if you don't deposit anything, we'll reach the 100,000-entry milestone
with next Wednesday's release :-)
--Gerard
On Fri, 9 May 2014, mesters wrote:
Great, just a few more structures to deposit and then 100.000 structures to
Hi Eugene, thanks for your response.
Yes, the program is LSQKAB. No aligment is pursued, the aim is just to
superpose models and get all the information as tables. Looking at old
jobs (CCP4 6.2: LSQKAB version 6.2 : 13/03/09), it seems it always did
the same, the results on xyz and B rms
Hi Gerard,
does that mean there are more than 70 structures released in a week? I
know the number of entries grows exponentially, yet having it cut down
to a graspable number makes it even more impressive.
Cheers,
Tim
On 05/10/2014 09:33 PM, Gerard DVD Kleywegt wrote:
See:
Hi Tim,
I think its easy to find:
pdbe.org/latest (found by googling around a little, and knowing that the
PDBe usually have some very nice short url's)
As far as I can see, the release for 2014-05-07 had 154 new structures in
the PDB.
Best regards,
Folmer
2014-05-10 22:00 GMT+02:00 Tim
Hi Tim,
PDBe always posts the number of new releases on Facebook (gotta like that). The
recent average is about 175 new entries per week.
Cheers,
Robbie
Sent from my Windows Phone
Van: Tim Gruene
Verzonden: 10-5-2014 22:00
Aan: CCP4BB@JISCMAIL.AC.UK
Onderwerp:
