Re: [ccp4bb] Positive densities map on selective residues on Coot or Pymol

2017-03-21 Thread Phoebe A. Rice
Thank you Bernard. I'd like to add that carving the density shown in a figure (especially without explicitly describing the carve radius used) is the moral equivalent of showing only 1mm of background above and below the band of interest in a western blot. Phoebe

[ccp4bb] Opening for a PhD position

2017-03-21 Thread Gert Bange
Dear All, There will be an opening for 1 PhD position (starting date: June 2017) in my group at the LOEWE Center for synthetic Microbiology (SYNMIKRO) at the Philipps University Marburg, Germany. SYNMIKRO is a highly interdisciplinary center that consists of members from seven faculties of

[ccp4bb] tNCS and PISA

2017-03-21 Thread Mohamed Noor
I am turning again to the wisdom of the community. In a paper, the authors used a dataset in P 1 2(1) 1 displaying tNCS (not mentioned anywhere in the paper) to model a dimeric structure. At the refinement stage, they used a twin law. Looking at the PDB-REDO entry, there is a warning line -

[ccp4bb] MoRDa update

2017-03-21 Thread Alexey Vagin
Dear All Morda at ccp4online has been updated. The structure solution program is improved and database is extended by about 900 entries. The update is also available for existing local Morda installations and can be installed from command line: change to installation directory (by default

[ccp4bb] Research Fellow Position available in Institute of Molecular and Cell Biology, Singapore

2017-03-21 Thread haiwei song
Dear All, We are seeking an enthusiastic and self-motivated postdoctoral research fellow to work on structural and functional analysis of proteins involved in RNA metabolism and the Hippo signalling pathway. The applicants should have a background in structural biology, biophysics, biochemistry

Re: [ccp4bb] Positive densities map on selective residues on Coot or Pymol

2017-03-21 Thread Bernhard Rupp
> and carve=2.0 means the mesh is created within 2.0 Å of the selected atoms. > Adjust these values to suit. I would advise extreme care when employing such presentation features. They are useful for display purposes and only when their use is stated as such, but they also open a venue