[ccp4bb] Protein-Protein Interaction prediction

2018-03-01 Thread Sayli Dalal
Dear all, Can anyone help me with a web server or method for prediction of interfaces for protein-protein interaction? Thanks and best regards, Sayli Dalal Post-Doctoral Fellow Dept. of Biophysics NIMHANS

Re: [ccp4bb] phenix refinement about cis-proline

2018-03-01 Thread Nigel Moriarty
Shijun You can ask all the questions you like about Phenix on PhenixBB. However, to answer your question, you can set all peptides to trans using apply_all_trans=True or more specific control using apply_cis_trans_specification { cis_trans_mod = cis *trans residue_selection = None

[ccp4bb] phenix refinement about cis-proline

2018-03-01 Thread 张士军
Dear all I am refining a structure which has cis-Pro and trans-Pro, the tans-Pro is gone when I set the "threshold degrees for cis-peptide " from default 45 to 65, but still has cis-Pro. While no significant change when I set it to 15. My question is how to set in phenix refinement to clear

[ccp4bb] Scalable and Reproducible Structural Bioinformatics Workshop & Hackathon 2018

2018-03-01 Thread Peter Rose
We are pleased to announce the second MMTF workshop: *Scalable and Reproducible Structural Bioinformatics Workshop & Hackathon 2018. *This workshop will be held May 7 – 9, 2018 at the University of California, San Diego and hosted by the Structural Bioinformatics Laboratory at the San Diego

[ccp4bb] Job opening at Merck in Kenilworth, NJ

2018-03-01 Thread Strickland, Corey
All, We have an open position for a protein crystallographer with significant experience. The position is located in our Kenilworth, NJ Structural Sciences group. For the complete job description and to apply see the link below. Sincerely, Corey _ Corey Strickland,

[ccp4bb] An overview of our crystallographic science

2018-03-01 Thread Jrh Gmail
Dear Colleagues, I prepared this overview of our crystallographic science in Biosciences Reports at the invitation of the Biochemical Society, which I imagine you would be interested in:- http://www.bioscirep.org/content/37/4/BSR20170204 It is open access. All best wishes, John Emeritus