Re: [ccp4bb] current location for the Superimposé web server ?

2020-03-01 Thread Fred Vellieux
Hello, Follow up concerning my query to the bb (in case anyone is interested), reply received from Robert Preissner through Philip E. Bourne and Joel Sussman: The Superimposé server was stopped in May 2018. Fred. Vellieux On 2/28/20 7:47 AM, Fred Vellieux wrote: *Hello, I am looking

Re: [ccp4bb] CCP4BB Digest - 27 Feb 2020 to 28 Feb 2020 (#2020-61)

2020-03-01 Thread dusan turk
Hi again, First, I wish to thank everyone for their responses. I hope that no one minds that I include them in my response letter to the Editor ? The idea of citing the Karplus and Diedrichs paper in Science has been essentially consumed already in our first response letter, which accompanied

Re: [ccp4bb] Hydrogens in PDB File

2020-03-01 Thread Tim Gruene
Dear Dale, your last sentence is of great importance: "leaving the (hopefully) manually inspected and curated Hydrogen atoms in the deposited PDB" I believe this hope is unrealistic. Most people do probably not think or understand what refinement programs do about hydrogen atoms. In Refmac5 it

Re: [ccp4bb] Hydrogens in PDB File

2020-03-01 Thread Robbie Joosten
Hi Dale, You make very valid points and there are good reasons to keep the refined hydrogen positions (methyl twists an protonation of HIS are good examples). There is a way of distinguishing refined a modelled hydrogens in mmCIF and we should start using that. About protonation of hustidines:

Re: [ccp4bb] Postdoctoral positions(2) in cryo-EM

2020-03-01 Thread Alessandro Vannini
Dear all, Just a reminder of the Postoctoral positions currently open in our laboratory. The positions are for 15 months initially, but extendable to up to 7 years! Harry up applying shortlisting of candidates started already! Best wishes, Ale PS. Get in touch with me directly if you require