Or you can go straight to uniprot. Every available PDB + alphafold model is linked to the uniprot entry.
On Fri, Jul 29, 2022 at 4:46 PM Robbie Joosten <robbie_joos...@hotmail.com> wrote: > Hi Paul, > > From the PDB file get the Uniprot primary accession code (see DBREF) and > use this to get the Alphafold model using 3D-beacons ( > https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/). > You can also use 3D-beacons to get the related AlphaFill model (just > saying...). > > Cheers, > Robbie > > > -----Original Message----- > > From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Paul > > Emsley > > Sent: Friday, July 29, 2022 20:31 > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: [ccp4bb] PDB to AlphaFold via Uniprot > > > > I wonder if others are curious about (or know how to solve) the > > following problem: > > > > I am looking at a PDB file that I've downloaded from a wwPDB site and I > > would like to see the AlphaFold model(s) overlaid. What the best (or > > easiest) way of doing that? (let's imagine that I can do a bit of > > scripting in python (including urllib) and can use the functions in Coot > > for the superposition). > > > > Thanks, > > > > Paul. > > > > ################################################################### > > ##### > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing > > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > > https://www.jiscmail.ac.uk/policyandsecurity/ > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > -- Nick Larsen Director - Lead Discovery H3 Biomedicine | an Eisai Oncology Company 300 Technology Sq #5 Cambridge, MA 02139 https://www.h3biomedicine.com/ -- [This e-mail message may contain privileged, confidential and/or proprietary information of H3 Biomedicine. If you believe that it has been sent to you in error, please contact the sender immediately and delete the message including any attachments, without copying, using, or distributing any of the information contained therein. This e-mail message should not be interpreted to include a digital or electronic signature that can be used to authenticate an agreement, contract or other legal document, nor to reflect an intention to be bound to any legally-binding agreement or contract.] ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
