Re: [ccp4bb] happy/sad maps

2023-04-30 Thread Sindelar, Charles
A simple way to visualize what is happening is with UCSF ChimeraX. You can use the gaussian filter function to select either the frown or the smile from the “hidden_frown.map”, and then you can visualize the FFT structure factor magnitudes for each one – here are the commands to do it - open

Re: [ccp4bb] happy/sad maps

2023-04-30 Thread James Holton
Thanks to all who replied both on- and off-list. A few (such as Charles below) have reported that using general-purpose FFT algorithms, such as those available in Matlab or NumPy do, in fact, get the smiley face map back.  This is expected because such algorithms do not have a resolution

Re: [ccp4bb] happy/sad maps

2023-04-30 Thread Gerard Bricogne
Dear James, The questions of optimally combining oversampling, blurring and de-blurring to obtain accurate approximations of Fourier transforms by discrete Fourier transform calculations are old hat: they go back to papers by David Sayre in 1951 ('The calculation of structure factors by

Re: [ccp4bb] happy/sad maps

2023-04-30 Thread James Holton
Thank you Paul.  This is interesting! I have not played with super-sampling yet.  I am assuming you mean creating a new map 8x the size? If so, did you fill the interstitial grid with zeroes? Local maximum? Linear interpolation?  Tricubic spline? And when you say "sharpen/blur" with a factor