Re: [ccp4bb] Superimposition save as PDB for ccp4 refmac question

Hi Marco, "Superpose" in *Coot* will also take any associated ligands along during the superposition. You can do this under "Calculate-> SSM Superpose". Be sure to check "move copy of moving structure". The one that moves will show as "copy of xxx", with xxx being the name of the one that was

Re: [ccp4bb] Superimposition save as PDB for ccp4 refmac question

Hi Marco, You could use the 'combine' command. You could select two models in chimeraX and which will write a single pdb file. Look at the below link. https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/combine.html Best, Rajiv On Tue, 27 Feb, 2024, 7:54 pm Marco Bravo, wrote: > Hello

[ccp4bb] Superimposition save as PDB for ccp4 refmac question

Hello all, Does anyone know how to save a superimposed pymol or chimerax session as a PDB file in correct format so that I can used it for ccp4 refmac? I am trying to superimpose a protein with DNA bound onto the same protein from a different species without the DNA. I just want the DNA from

Re: [ccp4bb] Combating disinformation in science and other areas

Dear Daniel, When board members expressed their opinions on social maladies (e.g. real or apparent sexism, anti-migrant bias, etc.) in the sciences in the past, that was being (divisively) political too--and thankfully so, I think. An exhortation to refrain from political issues is, like it

[ccp4bb] PDRA position in structural biology at Diamond Light Source, 3 year fixed term

We now have an opportunity for an experienced molecular structural biologist, at Post-Doctoral Research Associate level, to further support the structural biology activity on the I04 beamline in the field of chromatin remodelling and histone modification. These projects are pursued as part of

[ccp4bb] PDRA position in the University of Liverpool (UK)

UNIVERSITY OF LIVERPOOL DEPARTMENT OF BIOCHEMISTRY AND SYSTEMS BIOLOGY Cryo-EM STRUCTURAL BIOLOGY POSTDOCTORAL RESEARCH ASSOCIATE Grade 7 (Salary range £38,250 - £40,521 pa) An exciting opportunity has emerged to join the Molecular Biophysics Group to work on

[ccp4bb] Bursary Extension - Monday 4 March 10th CCP-EM Spring Symposium/DLS BCI User Meeting 30th April - 2nd May 2024

Dear all, ** We have additional bursary places and have extended the bursary deadline to Monday 4th March ** This is thanks to kind support from: CryoCloud, CryoSol, Dectris, Quantum Detectors, Nanosoft, SubAngstrom and Thermo Fisher Scientific. The bursaries will cover registration fee and

[ccp4bb] FAPESP Postdoctoral Position on in situ Cryo-Electron Tomography

Dear Colleagues, With the Aquilos 2 cryo-FIB soon available at our Institute (link 1 ), allow me to advertise a fellowship opportunity in my lab briefly: *Overview*: This project to be developed at the São Carlos Institute of