[ccp4bb] Final Announcement: BioSAS Training Workshop, ACA 2013

2013-05-23 Thread Richard Edward Gillilan
ACA BioSAS Training Workshop WK.01 Biological Small Angle Solution Scattering Theory and Practice 2013 ACA meeting in Hawaii There is still Room. Reserve your space now! The early registration discount ends May 31*. Small angle solution scattering (SAS) has recently experienced a dramatic

[ccp4bb] common proteins that oligomerize?

2013-04-24 Thread Richard Edward Gillilan
I am looking for easily-available proteins that exist in equilibrium between two or more known oligomeric states in solution. BSA is a possibility, but I am concerned that the rate constant for association may be rather slow. Fast exchange would be better. Does anyone know of other

[ccp4bb] BioSAXS time available at CHESS: May 8-June 18

2013-04-16 Thread Richard Edward Gillilan
BioSAXS time is available at CHESS Please apply soon to guarantee your spot! Dear BioSAXS users, Beamtime is available for the Summer run (May 8 - June 18, 2013) for BioSAXS. To apply for time, please submit an online express-mode proposal at

Re: [ccp4bb] International Symbol for sin(theta)/lambda

2011-06-30 Thread Richard Edward Gillilan
This has been a point of confusion Here are the conventions used in a few of the classic SAXS text vs. recent reviews: -- I believe Guinier actually used the variable u in his thesis, but must have changed at some point (I don't have it handy to check at the moment). Guinier

Re: [ccp4bb] Milestones in Crystallography

2011-06-19 Thread Richard Edward Gillilan
Three years is starting to be a reasonable time interval to see interesting scientific progress. On the 1 or 2 years time scale it is hard, as anyone organizing annual meetings will tell you. One thing I would do is to browse the abstracts of the most recent American Crystallographic

Re: [ccp4bb] Nanodrop versus Nanophotomter Pearl versus good old Bradford.

2011-06-16 Thread Richard Edward Gillilan
Hi Chelsy, yes we had a lot of trouble with the nanoview during that run. Even after going through the calibration procedure with the special fluid provided, we still had inconsistent results even on standards. Finally, I carefully cleaned the return light path of the instrument (a separate

Re: [ccp4bb] while on the subject of stereo

2011-03-22 Thread Richard Edward Gillilan
There are actually a bunch of depth cues that humans use to perceive 3-dimensionality. Existing computer displays only reproduce a few. Because of redundancy, people can function with only a subset, but it can be a serious handicap. Individuals who are stereoblind can learn to judge distances

Re: [ccp4bb] Liquid nitrogen resistant flooring

2011-02-16 Thread Richard Edward Gillilan
This has been a problem for us too. Sorry, I don't have a solution to offer except, recently, we have provided metal buckets filled with a layer of aquarium gravel at each station and encouraged users to dump their excess nitrogen there instead of on the floor. Richard On Feb 16, 2011, at

[ccp4bb] x-ray sensitive dye?

2011-02-08 Thread Richard Edward Gillilan
Does anyone know of a water soluble dye that changes color upon exposure to x-rays? Preferably from clear to a dark color. Must work in the liquid state (non-frozen... so color centers are out). Doesn't matter if it is organic or inorganic. Thanks Richard Gillilan MacCHESS Cornell

Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein?

2011-01-19 Thread Richard Edward Gillilan
Since several people have asked me for code, I now realize that I've contributed my bit to the confusion over names of various surface definitions. To clear things up there is an excellent online article which covers the history of various molecular surface definitions that I highly recommend:

Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein?

2011-01-14 Thread Richard Edward Gillilan
-nancy.frhttp://medecine.uhp-nancy.fr Cell.: +33 (0)6.11.35.69.09 On 13/01/2011 13:40, Richard Edward Gillilan wrote: : Subject: Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein? My knowledge on this is probably

Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein?

2011-01-13 Thread Richard Edward Gillilan
: Subject: Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein? My knowledge on this is probably quite out of date by now, but some years ago there was a lot of research on this topic because such surfaces are

Re: [ccp4bb] SAXS collection

2011-01-12 Thread Richard Edward Gillilan
What kind of SAXS data are you looking for? Richard On Jan 11, 2011, at 11:29 PM, Rojan Shrestha wrote: Hello: I am searching for SAXS data depositor like protein data bank for protein structure and EDS from electron density map. I have no idea how can I get SAXS data. Is there a depository

Re: [ccp4bb] Saxs reviews or books

2011-01-12 Thread Richard Edward Gillilan
I will second this particular reference (below). A number of our SAXS users have found it to be one of the most accessible and practical guides for the non-specialist/non-physicist, with lots of emphasis on biological applications. Someone already mentioned the EMBO practical course web link,

Re: [ccp4bb] monomer-dimer

2010-08-09 Thread Richard Edward Gillilan
Small angle x-ray solution scattering (SAXS) can also give you molecular weight, though not quite as accurately as the best static light scattering. While SAXS is preferably done on monodisperse systems extrapolated to infinite dilution, cases in which the monomer and dimer are in equilibrium