Downloading structures of the same homologous family with blast. Then
superimpose them on a reference structure. You may then try to look at over
lapping water molecules
On 30 Oct 2013 02:23, Elise B ek...@case.edu wrote:
Hello,
I am working on a project with several (separate) structures of
Dear Mahesh,
Instead of bothering with the secondary structure assignments why may
try to superpose your structures and then view your RMSD
plots(Superpose program in CCP4 can do the trick). You might then be
better off focusing on the regions with high RMSD.
Regards
On Sat, Oct 19, 2013 at 3:20
Dear All,
I am looking for a method to quickly differentiate between salt and protein
crystals. I have been told thats its a popular alternative to the
commercially available izit dye. I would appreciate if some one would share
their comassie crystal staining protocol.
Swastik
Dear All,
I am currently setting up a system running UBUNTU-12.04.3 (64 bit version),
When I try to install CCP4 software suite by using the software suite, it
kinda gets hung with the message Now communicating with CCP4 server,
please wait.. for ever
Any help would be usefull.
One standard thing to do would be to set up a grid around the condition and
then try picking crystals from different well to see if any of them produce
better looking diffraction patterns. If that does not work one might give
any of the commercially available additive screen a try to see if
Hi,
May be this would help
https://www.youtube.com/watch?v=QcsaWowulDM
On Fri, Sep 13, 2013 at 2:51 PM, Frank von Delft
frank.vonde...@sgc.ox.ac.uk wrote:
Hi all - does anybody know where I can find a video of a crystal being
harvested, but taken through a microscope?
The Google has not been
Dear All,
I have been working on a high resolution protein structure using Shelx
for refinement.
In the PDB output by Shelxl the hydrogen atom names are in duplicate
which is causing difficulty in PDB deposition.
I am aware of the use of shelxpro's B option to prepare for pdb
deposition, it
name
pdbset: Use: logical name file name
Times: User: 0.0s System:0.0s Elapsed: 0:00
Does any one have any idea what's wrong here?
Swastik Phulera
--
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स्वस्तिक फुलेरा
वरिष्ठ अनुसंधान कर्ता
राष्ट्रीय कोशिका विज्ञान केंद्र
पुणे विश्वविद्यालय परिसर,
गणेशखिंड
पुना, ४११,००७
-- Forwarded message --
From: Swastik Phulera swastik.phul...@gmail.com
Date: Tue, Jun 11, 2013 at 1:51 PM
Subject: Re: [ccp4bb] pdbset
To: Tim Gruene t...@shelx.uni-ac.gwdg.de
Dear Tim, Miguel
Thanks for your suggestions, the program does work now, but it seems that
it cant
...@shelx.uni-ac.gwdg.de wrote:
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Hash: SHA1
Dear Swastik Phulera,
unless you need the ANISOU cards, you can first remove them with e.g.
grep -v ^ANISOU youfile.pdb yournewfile.pdb
before running pdbset.
(I hope you don't work on a Windows machine, then you
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