If you are interested in finding other interactions that look like one
particular one, rather than just classifying things (e.g., is this
cyan, sea-foam, turquoise or teal?), then I'd recommend the
substructure searching capabilities of the DrugSite server
You can specify any arbitrary
Hi all,
I was wondering if anyone knew of a software or server to mine the PDB for
a specific class of interactions? I've tried PDBeMotif without much luck
and I thought I'd check to see if there was an alternative before I go
re-inventing the wheel.
Cheers,
Katherine
--
Nil illegitimo
...@gmail.com
Date: Monday, October 28, 2013 12:23 PM
To: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Data mining interactions in the PDB
Hi all,
I was wondering if anyone knew of a software or server to mine the PDB
...@gmail.com
Date: Monday, October 28, 2013 12:23 PM
To: CCP4BB@JISCMAIL.AC.UK mailto:CCP4BB@JISCMAIL.AC.UK
CCP4BB@JISCMAIL.AC.UK mailto:CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Data mining interactions in the PDB
Hi all,
I was wondering if anyone knew of a software or server to mine the PDB
On 10/29/2013 03:23 AM, Katherine Sippel wrote:
Hi all,
I was wondering if anyone knew of a software or server to mine the PDB
for a specific class of interactions? I've tried PDBeMotif without much
luck and I thought I'd check to see if there was an alternative before I
go re-inventing the
How about this server
http://iris.physics.iisc.ernet.in/psap/
On 10/29/2013 03:23 AM, Katherine Sippel wrote:
Hi all,
I was wondering if anyone knew of a software or server to mine the PDB
for a specific class of interactions? I've tried PDBeMotif without much
luck and I thought I'd
