Re: [ccp4bb] Database for submitting unprocessed diffraction data

Hey All, Thank you kindly for the feedback. I will go ahead to sift through these options, I'll let you all know what we do in the end! Best, Jerome On Thu, Oct 19, 2023 at 3:39 PM Mirek Gilski wrote: > Dear Graeme , > > Our repository is hosted by one of the biggest computer center in Poland

Re: [ccp4bb] Database for submitting unprocessed diffraction data

Dear Graeme , Our repository is hosted by one of the biggest computer center in Poland - Interdisciplinary Center for Mathematical and Computational Modelling of University of Warsaw (ICM UW), and as I was assured that their disk resources would be sufficient even for very demanding users.

Re: [ccp4bb] Database for submitting unprocessed diffraction data

Dear Mirek Scraping metadata from the image headers is a very nice idea I wonder, how sustainable is your system? For example would I be thanked or cursed for uploading substantial interesting data sets? One of the advantages of Zenodo, as much publicised and also highlighted by Loes, is the

Re: [ccp4bb] Database for submitting unprocessed diffraction data

Dear Jerome, You can consider a Macromolecular Xtallography Raw Data Repository (MX-RDR), which is a dedicated archive of raw diffraction data collected for macromolecular crystals. It includes tools for creating sets of crystallographic metadata by combining information extracted directly

Re: [ccp4bb] Database for submitting unprocessed diffraction data

ccp4bb] Database for submitting unprocessed diffraction data CAUTION: This email originated from outside of Utrecht University. Do not click links or open attachments unless you recognize the sender and know the content is safe. Hello all, As the subject says, I am looking for an open online da

Re: [ccp4bb] Database for submitting unprocessed diffraction data

This months publication in Acta Cryst F by Loes Kroon-Batenburg may be of interest: https://journals.iucr.org/f/issues/2023/10/00/va5053/index.html Mark van Raaij Dpto de Estructura de Macromoleculas, lab 20B Centro Nacional de

Re: [ccp4bb] Database for submitting unprocessed diffraction data

Van: CCP4 bulletin board namens JEROME JOHNSON <b0fa085259cb-dmarc-requ...@jiscmail.ac.uk> Verzonden: woensdag 18 oktober 2023 18:23 Aan: CCP4BB@JISCMAIL.AC.UK Onderwerp: [ccp4bb] Database for submitting unprocessed diffraction data CAUTION: This

Re: [ccp4bb] Database for submitting unprocessed diffraction data

Hi, XRDa https://xrda.pdbj.org/ archives raw crystallography datasets for both PDB and non-PDB entries (e.g. https://xrda.pdbj.org/entry/93), as well as MicroED datasets (e.g. https://xrda.pdbj.org/entry/140). Best regards, Keitaro On Thu, 19 Oct 2023 at 05:48, Kay Diederichs wrote: > > There

Re: [ccp4bb] Database for submitting unprocessed diffraction data

There is one more - https://mxrdr.icm.edu.pl/ HTH, Kay On Wed, 18 Oct 2023 19:23:06 +0300, JEROME JOHNSON wrote: >Hello all, > >As the subject says, I am looking for an open online database to store >unprocessed diffraction data. Does such a database exist? Essentially we >would like our

Re: [ccp4bb] Database for submitting unprocessed diffraction data

Hi, There's proteindiffraction.org although I'm not sure if it requires a deposited PDB. If that fails, you can deposit it at cxidb.org, a repository focused on data acquired at XFELs which I started, but which also hosts other data (e.g. https://cxidb.org/id-42.html). Cheers, Filipe On Wed, 18

Re: [ccp4bb] Database for submitting unprocessed diffraction data

You could try https://www.proteindiffraction.org/ From: CCP4 bulletin board on behalf of JEROME JOHNSON <b0fa085259cb-dmarc-requ...@jiscmail.ac.uk> Date: Wednesday, October 18, 2023 at 11:33 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Database for submitting unprocessed diffr

Re: [ccp4bb] Database for submitting unprocessed diffraction data

.AC.UK Subject: [ccp4bb] Database for submitting unprocessed diffraction data Hello all, As the subject says, I am looking for an open online database to store unprocessed diffraction data. Does such a database exist? Essentially we would like our diffracted data to be freely available online

Re: [ccp4bb] Database for submitting unprocessed diffraction data

We’ve used Zenodo. It’s not dedicated solely to diffraction data, but it does check the “freely available” box. > On Oct 18, 2023, at 12:23 PM, JEROME JOHNSON > wrote: > > Hello all, > > As the subject says, I am looking for an open online

[ccp4bb] Database for submitting unprocessed diffraction data

Hello all, As the subject says, I am looking for an open online database to store unprocessed diffraction data. Does such a database exist? Essentially we would like our diffracted data to be freely available online while also outsourcing some of our data management. Any advice would be