[ccp4bb] Fwd: Strange Density

2013-02-04 Thread Jared Pitts
Hello all, I have recently solved a 2.0 angstrom resolution structure. The structure is near complete but I have some unusual density at the crystallographic interface between two chains of different asymmetric units. The linked photos show the density at with a Fo-Fc at 3 sigma and 2Fo-Fc at 1

Re: [ccp4bb] Fwd: Strange Density

2013-02-04 Thread Roger Rowlett
It's possibly a transition metal ion. Zinc is a common adventitious contaminant of solutions. Typical Zn-O distances (tetrahedral or pseudo-tetrahedral coordination) are 2.0 A. ICP-OES or ICP-MS of the protein solution might offer a clue to the possible identity of the metal ion, since it

Re: [ccp4bb] Fwd: Strange Density

2013-02-04 Thread Nat Echols
On Mon, Feb 4, 2013 at 12:24 PM, Roger Rowlett rrowl...@colgate.edu wrote: It's possibly a transition metal ion. Zinc is a common adventitious contaminant of solutions. Typical Zn-O distances (tetrahedral or pseudo-tetrahedral coordination) are 2.0 A. ICP-OES or ICP-MS of the protein solution