Dear Bernhard,
Funnily enough we wanted to do precisely that yesterday and
the kind folks at the PDBe sent us this csv file (attached,
but small).
It is the result of a query in the PDBe/chem database of all
residues for which the molecule type is amino acid. Other
than all the cases you are
Dear All,
Is there a simple way (or already an existing list) to extract/parse from
the heterodictionaries or monomer libraries which 3-letter symbols are
actually modified standard amino acids (as compared to bona fide ligands,
solvent molecules etc)?
Thx!!
BR
On Tue, Jul 26, 2011 at 10:46 AM, Bernhard Rupp (Hofkristallrat a.D.)
hofkristall...@gmail.com wrote:
Is there a simple way (or already an existing list) to extract/parse from
the heterodictionaries or monomer libraries which 3-letter symbols are
actually modified standard amino acids (as
If you simply want a list of modified residues, here is one that I
compiled a while ago. More details on each can be found at LigandExpo.
'0CS' = 'ALA', '0NC' = 'ALA', 'AA3' = 'ALA',
'AA4' = 'ALA', 'ABA' = 'ALA', 'AHO' = 'ALA', 'AHP' = 'ALA', 'AIB' =
'ALA',
'ALC' = 'ALA', 'ALM' = 'ALA', 'ALN'
On Tuesday, July 26, 2011 10:46:34 am Bernhard Rupp (Hofkristallrat a.D.) wrote:
Dear All,
Is there a simple way (or already an existing list) to extract/parse from
the heterodictionaries or monomer libraries which 3-letter symbols are
actually modified standard amino acids (as compared to
: Re: [ccp4bb] Modified residue list
On Tuesday, July 26, 2011 10:46:34 am Bernhard Rupp (Hofkristallrat a.D.)
wrote:
Dear All,
Is there a simple way (or already an existing list) to extract/parse
from the heterodictionaries or monomer libraries which 3-letter
symbols are actually modified
