[ccp4bb] opening for Postdoctoral fellow - Pfizer Structural and Molecular Sciences

2017-08-01 Thread Calabrese, Matthew
* The successful candidate will join the Groton Structural and Molecular Sciences group which has extensive expertise in the gene to structure pipeline, in addition to biophysics and chemical biology. Our mission is to provide integrated molecular insights into drug targets and

Re: [ccp4bb] refmac output

2017-08-01 Thread Diana Tomchick
Yes, I agree! This (“Please look at my structure, and here are my files from the last cycle of refinement") happens to me almost every week. :) Diana ** Diana R. Tomchick Professor Departments of Biophysics and Biochemistry University of Texas

Re: [ccp4bb] refmac output

2017-08-01 Thread James Holton
As someone who uses those "superfluous" columns all the time, I would like to chime in in favor of keeping the default output columns of refmac. If only I had a nickle for every time someone asked me to "look at" a structure and only gave me the output files of refinement. Kind of ties your

[ccp4bb] drawing of peptide interaction

2017-08-01 Thread chemocev marker
Hi I wanted to draw a peptide interaction in the catalytic site together with side chain of the enzyme. What is a good program to do that, or web based service. I see the LIGPLOT and I am wondering if there are some other alternatives of that. best Jiri

Re: [ccp4bb] weird diffraction pattern

2017-08-01 Thread James Holton
Hello Tang, 1) For MR, you might want to try a range of homologs, or even a stack of overlapping homologs. A normal modes server like elNemo might also help if it can predict the "bend" your molecule undergoes upon binding. A long shot perhaps, but stranger things have happened. You also

[ccp4bb] PDBepisa

2017-08-01 Thread Careina Edgooms
HelloI have two questions if anyone can help:1. Does anyone know how PDBe Pisa calculate if the residues interact? I can't find an explanation for this. 2. Also, I want to do SAXS on a liquid sample using a rigaku smartlab x-ray diffractometer. It is set up for powder and the software they use