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Dear Colleagues,
Registration for the AsCA 2018/CRYSTAL 32 Conference workshops which will be
held on Sunday, 2 December 2018 is now open.
Delegates can register for a workshop at
Hi,
seeing a "blue" map might at lower sigma levels might give some more
insight. However, there are some caveats in doing so, like solvent
flattening during the refinement. Phenix has options to calculate some
fancy maps, which might give you some more "tips": Feature Enhanced Map,
and
This should work in latest nightly builds:
phenix.pdbtools model.pdb clear_seg_id=true
If it doesn't please report a bug (on appropriate Phenix lists).
Good luck!
Pavel
On Thu, Jul 5, 2018 at 4:33 AM, Eugene Osipov wrote:
> Hello everyone,
> is there any simple way in CCP4 to clear segid
Hi,
has anyone of you performed a PISA command line analysis using the version
distributed with CCP4 on ubuntu-16.04? My attempt to "-list interfaces"
after seemingly successful "-analysis" resulted in a core dump:
PISA v.2.1.1 built 05-04-2017 with SSM v.1.4.0, SRS v.1.0.0, MMDB
v.2,0.17
Dear All
I am pleased to announce the second CCP4/Spring-8 (RIKEN) workshop running from
1-6 October 2018.
This workshop will cover data collection, processing and structure solution.
Details are available at
http://www.ccp4.ac.uk/schools/Japan-2018 , with more to follow. Registration
is on
I'd like to add the more current CCP4 solution: AceDRG. It works really well
and you only need to feed it the SMILES string of your compound.
Also keep in mind that many compounds are actually already in the CCP4
dictionary. Finding out whether a compound is, is a two-step procedure:
1) Go to
I couldn’t agree more with Patrick which is often the case.
To echo some of his comments, in the High-Throughput Crystallization Screening
Center we see many examples where the visual images of initial crystallization
hits are very poor and experienced (or inexperienced) crystallographers would
Opps sorry - that's the wrong format. Try this instead.
Paul
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On 05/07/2018 15:00, Yoder, Marilyn wrote:
I'm having problems adding XYP (beta-xylose) to my glycosylation chain in a
plant protein.
Hello again Marilyn,
Having reflected on the problem, I hope that I can offer a bit more insight than "use the latest version" -
so here's another attempt.
Hey Uma
Yes, you are right that PFPE is too big for this density. Also, more
experienced scientist in this field has already commented on it.
For the second part of your query, this is how one can generate the
"crystallographic information file" - .cif for the ligand of choice (in
case it is not
Dear Anirban,
On 05/07/18 22:06, Sanishvili, Ruslan wrote:
Hi Anirban,
It would be great if you could share the compilation of relevant
responses to your request. I think many others in the community could
use these examples for educational purposes.
Quite so, and I am sure that a lot of
Hi All
I have a comment, based on my old supervisor's explanation, which seemed to
make sense.
Crystals usually grow layer by layer. Once a new layer is formed it
quickly expands to cover the whole surface. That's why crystals normally
have flat surfaces and sharp edges - the layers/steps
Hello,
a really molecule should show up also in the 2Fo-Fc type map. This
appears not to be the case.
So indeed it is likely that your density corresponds to some
alternate conformation of the surrounding residues present with low
occupancy. The glutamic acid
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