Re: [ccp4bb] Ample fails

2014-07-11 Thread Thomas, Jens
Dear Florian, Sorry to hear that Ample isn't working for you. I haven't seen this error before, but my initial guess would be that you're trying to run Ample on Windows? If so then unfortunately the current release of Ample isn't supported on Windows. Most of the work to port Ample to Windows

Re: [ccp4bb] AMPLE failure

2014-07-12 Thread Thomas, Jens
Dear Rob, Sorry to hear that this issue has affected you - it's a known bug which will be fixed in the next ccp4 update. AMPLE has run to completion but crashed printing out the results. To see the results, you can run the following command at the terminal (command-line):

Re: [ccp4bb] compiling Fortran 77 code on a Linux box (using gfortran ?)

2013-03-06 Thread Thomas, Jens
Hi Fred, From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of vellieux [frederic.velli...@ibs.fr] When compiling Fortran77 code (these are the flags used for compilation: -o ../bin/$1 -std=legacy -Wno-globals -w -O3 -malign-double

Re: [ccp4bb] getting error while running Ample

2014-11-15 Thread Thomas, Jens
Dear Yogesh, It looks like you're trying to run AMPLE on Windows. Unfortunately, it isn't currently supported on Windows.(although it will be in a forthcoming CCP4 release). Do you have access to a Linux or Mac OSX machine that you could install CCP4 on? Best wishes, Jens

Re: [ccp4bb] rosetta from sbgrid

2014-11-16 Thread Thomas, Jens
Hi Ursula. I don't have any experience of sbgrid, but the executable that AMPLE needs will be called something along the lines of: AbinitioRelax.linuxgccrelease (the name after the dot will change depending on the platform and how Rosetta was compiled). If you can find that (try using

Re: [ccp4bb] Phaser going into infinite loop in Ample

2015-04-22 Thread Thomas, Jens
Dear Dale, This is a known issue with AMPLE and will be fixed with the next release. In the meantime you can tell AMPLE to pass the KILL option that Randy mentions to PHASER, by adding the following arguments to your script: -mr_keys PKEY KILL TIME 360 this will kill PHASER after 360 minutes

Re: [ccp4bb] Equation Editor woes with Office 2011 for Mac

2015-05-18 Thread Thomas, Jens
Hi Randy, It's not ideal, but until the bug gets fixed or there's a more elegant solution, could you just set up your own autosave? It'd mean opening a terminal and running a command before starting, but if you had a little script like the below running while you were working you'd at least

Re: [ccp4bb] error with AMPLE on CCP4 7.0 installed as precompiled binary

2016-12-07 Thread Thomas, Jens
Dear Kaushik, This is a known bug that shouldn't have made it out into in any CCP4 releases and has been fixed. With any luck, updating CCP4 should fix it. If you're on a headless machine (one with no monitor), you can update CCP4 with the command: /home1/nkumar/software/ccp4-7.0/bin/ccp4um

Re: [ccp4bb] Unrecognised argument problem in AMPLE

2018-01-18 Thread Thomas, Jens
Dear Derek, Sorry to hear that you've had problems running AMPLE. We've made a number of updates recently and it looks like you've encountered a problem with the gui and the code becoming out of sync. Are you running AMPLE from ccp4i? A new ccp4 update will be released in the next few days