Re: [ccp4bb] [EXT] RE: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-05 Thread kavyashreem
nternal 432092) > Section Editor Acta Crystallographica F > https://journals.iucr.org/f/ > > On 4 Feb 2023, at 15:48, kavyashreem wrote: > > Dear all, > > Sorry for the confusion created, I did not mean that a protein would have fit > in the small unit cell. My ques

Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-06 Thread kavyashreem
seems like a dirty trick, if your > expectation is that only protein crystals can do that. The brightfield white > light image of the crystals is also consistent with not-protein crystals, > because of the high refractive index contrast between the crystals and the > mother liquor. > &

Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-04 Thread kavyashreem
of Biochemistry > https://www.biochem.uni-luebeck.de [6] > phone: +49-451-3101-3105 > Ratzeburger Allee 160 > 23562 Lübeck > Germany > -- > >> Am 03.02.2023 um 09:22 schrieb kavyashreem : >> >> Dear all, >> >> We crystallized a protein (30kDa) + liga

Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-04 Thread kavyashreem
ethods. You never know, it > could be something interesting. > > Mark J van Raaij > Dpto de Estructura de Macromoleculas, lab 20B > Centro Nacional de Biotecnologia - CSIC > calle Darwin 3 > E-28049 Madrid, Spain > tel. +34 91 585 4616 (internal 432092) > Sectio

Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-04 Thread kavyashreem
on Editor Acta Crystallographica F > https://journals.iucr.org/f/ > https://namedrop.io/markvanraaij > >> On 3 Feb 2023, at 09:22, kavyashreem wrote: >> >> Dear all, >> >> We crystallized a protein (30kDa) + ligand (by cocrystallization), in the >> condition

Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-04 Thread kavyashreem
gt; > I am pretty sure you crystallised the ligand, or TCEP actually. > > Also, if you look at the diffractions pattern, its clear the crystal > diffracts beyond 1.0A, diffraction spots are really very very very strong at > 2.0A. > >> On 3 Feb 2023, at 09:22, kavyas

Re: [ccp4bb] [EXT] Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-04 Thread kavyashreem
tallographica F > https://journals.iucr.org/f/ > > On 4 Feb 2023, at 15:48, kavyashreem wrote: > > Dear all, > > Sorry for the confusion created, I did not mean that a protein would have fit > in the small unit cell. My question was - > > 1. Why are there close

Re: [ccp4bb] [EXT] Re: [ccp4bb] [EXT] Re: [ccp4bb] Regarding the diffraction image

2023-02-07 Thread kavyashreem
91 585 4616 (internal 432092) > Section Editor Acta Crystallographica F > https://journals.iucr.org/f/ > > On 4 Feb 2023, at 15:48, kavyashreem wrote: > > Dear all, > > Sorry for the confusion created, I did not mean that a protein would have fit > in the small uni

[ccp4bb] Crystallizing a tough target

2024-02-05 Thread kavyashreem
Dear All, Has anyone worked on a protein which is highly soluble even at 80mg/ml? We have one such candidate, which does not precipitate even at 80mg/ml instead forms phase separated globules in crystallization plate, which eventually hardens over a period of 1 to 1.5 months (which is

Re: [ccp4bb] [EXT] Re: [ccp4bb] Crystallizing a tough target

2024-02-07 Thread kavyashreem
f > > 2. Many years ago, we did some data mining of the crystallization conditions > in a remark in the PDB. The concentrations that people reported are below. > There were eight reports where over 100 mg/mL was used. It only goes up to > 2004. > >> https://www.douglas.co.uk/PDB_data.ht

Re: [ccp4bb] [EXT] [ccp4bb] Crystallizing a tough target

2024-02-05 Thread kavyashreem
concentrations (will try) 10. Organic solvents (though about it) 11. Mutations (ongoing) Thank you Regards Kavya On 2024-02-05 15:57, kavyashreem wrote: > Dear All, > > Has anyone worked on a protein which is highly soluble even at 80mg/ml? > > We have one such candid

Re: [ccp4bb] [EXT] Re: [ccp4bb] [EXT] [ccp4bb] Crystallizing a tough target

2024-02-05 Thread kavyashreem
p alter the protein properties and facilitate new crystal > contacts. Additionally, it may be worth experimenting with reduced salt > concentrations or using a salt-free buffer, akin to using water in place of a > buffer. > > PMID: 32541044 > PMID: 26850170 > > W

Re: [ccp4bb] [EXT] Re: [ccp4bb] [EXT] [ccp4bb] Crystallizing a tough target

2024-02-05 Thread kavyashreem
; to electrostatic repulsion? > > Hi Kavyashreem > > The project that I mentioned, where we looked at the crystallization > conditions reported in the PDB, also looked at the areas of amino acids (and > atoms) on the surfaces of proteins and tried to correlate the various group