Re: [ccp4bb] [External] Re: [ccp4bb] protein DNA complex structure and extension of DNA structure

2022-01-01 Thread Jiří Černý
, 2022 11:01 AM To: Srivastava, Dhiraj <mailto:dhiraj-srivast...@uiowa.edu>; CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> <mailto:CCP4BB@JISCMAIL.AC.UK> Subject: [External] Re: [ccp4bb] protein DNA complex structure and extension of DNA structure I would try the t

Re: [ccp4bb] [External] Re: [ccp4bb] protein DNA complex structure and extension of DNA structure

2022-01-01 Thread Srivastava, Dhiraj
@JISCMAIL.AC.UK Subject: [External] Re: [ccp4bb] protein DNA complex structure and extension of DNA structure I would try the tools on this site - http://web.x3dna.org/index.php/protein From: CCP4 bulletin board on behalf of "Srivastava, Dhiraj" Reply-To: "Srivastava, Dhiraj

Re: [ccp4bb] protein DNA complex structure and extension of DNA structure

2022-01-01 Thread Phoebe A. Rice
I would try the tools on this site - http://web.x3dna.org/index.php/protein From: CCP4 bulletin board on behalf of "Srivastava, Dhiraj" Reply-To: "Srivastava, Dhiraj" Date: Monday, December 27, 2021 at 8:32 PM To: "CCP4BB@JISCMAIL.AC.UK" Subject: [ccp4bb]

[ccp4bb] protein DNA complex structure and extension of DNA structure

2021-12-27 Thread Srivastava, Dhiraj
Hi I solved the structure of protein DNA complex where the DNA molecule is bent. I want to extend the DNA computationally so I can model two DNA binding proteins together on same DNA molecule. is there a way by which I can extend the DNA in both direction? its easy to do it with ideal DNA