This sounds like a job for a DDM (difference-distance matrix). This method
can detect very subtle conformational changes between a pair of protein
structures without performing a structural alignment. Once the areas of
change have been identified a traditional alignment can be performed using
-224
Bursaries are available for travel within the UK. Registration closes
on Friday 5th September and places will be confirmed by 12th
September.
We look forward to seeing you in October,
Kind regards,
Tom and the rest of the CCP-EM team
--
Dr Tom Burnley, PhD
Science and Technology Facilities
* Confirmed tutors:
Maya Topf (Birkbeck)
Alan Roseman (Manchester)
Garib Murshudov (MRC-LMB Cambridge)
Paul Emsley (MRC-LMB Cambridge)
Agnel Praveen Joseph (STFC)
Ardan Patwardhan (EBI)
Stuart McNicholas (York)
Best wishes,
Tom
--
Dr Tom Burnley, PhD
Science and Technology Facilities Council (STFC
suggest me some good
readings related to Cryo-EM..
Thanx in advance
--
Regards
Faisal
School of Life Sciences
JNU
--
Folmer Fredslund
--
Dr Tom Burnley, PhD
CCP-EM
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Rutherford Appleton Laboratory, R92
and the rest of the CCP-EM team.
--
Dr Tom Burnley, PhD
CCP-EM
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Rutherford Appleton Laboratory, R92
OX11 0FA
01235 56 7871
http://www.diamond.ac.uk/Science/Integrated-facilities/eBIC.html
http://www.ccpem.ac.uk/
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em | www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Rutherford Appleton Laboratory, R92
OX11 0FA
01235 56 7871
to apply.
http://www.diamond.ac.uk/Careers/Studentships/untitled0.html
Informal enquiries may be addressed to either supervisor:
Peijun Zhang, peijun.zh...@diamond.ac.uk, Diamond Light Source
Kevin Cowtan, kevin.cow...@york.ac.uk, University of York
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em
tion:
https://eventbooking.stfc.ac.uk/news-events/icknield-workshop-376
Best wishes,
Tom
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Rutherford Appleton Laboratory
https://www.nature.com/naturejobs/science/jobs/619081-senior-support-scientist-centre-co-ordinator
Best regards,
Peijun
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex At H
d0742b70%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1=sYj49Dkc12YQQvPH1zoNhPnjOgOhAyniq5EUVLBk3E8%3D=0>
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Rutherford Appleton Laboratory, R92
OX11 0FA
01235 56 7871
4i (old GUI) works perfectly fine, but the session
>> log that is accessible via the interface is only valid for the current
>> session.
>> I am running 64 bit Kubuntu 10.16 on a windows host virtualbox.
>>
>> Cheers,
>> Johannes
>>
>
>
--
Dr Tom Burnley
, Leeds), Albert Solernou (Physics/Leeds)
and Ste Muench (Biological Sciences, Leeds), Tom Burnley (CCP-EM/STFC)
CCPBioSim-EM Workshop (14th July): Structural characterisation of proteins
and protein complexes by cryo-EM and cryo-ET is now providing access to a
wide range of macromolecular assemblies
Hi,
CCP-EM (CCP4 sister project for cryoEM) can help you here. We have a EM
specific interface for several CCP4 programs as well as some others and
will handle map to mtz conversions for you.
You can download the suite here:
http://www.ccpem.ac.uk/download.php
We recently ran a workshop on
Microscopy and Tomography
Sarah Harris (CCP-BioSim/Physics, Leeds), Albert Solernou (Physics/Leeds)
and Ste Muench (Biological Sciences, Leeds), Tom Burnley (CCP-EM/STFC)
CCPBioSim-EM Workshop (14th July): Structural characterisation of proteins
and protein complexes by cryo-EM and cryo-ET is now
University of Oxford
Roosevelt Drive Oxford OX3 7BN, UK
pei...@strubi.ox.ac.uk
http://www.ndm.ox.ac.uk/principal-investigators/researcher/peijun-zhang
eBIC Director,
Diamond Light Source, UK
http://www.diamond.ac.uk/Science/Integrated-facilities/eBIC.html
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em
site:
http://www.cvent.com/d/9tq4ln
Registration fees:
PI/Industrial: £175.00
Student/PostDoc: £100.00
We have also ensured reasonably priced accomodation is available from Keele
University (£70/room/night; available on registration).
Best wishes,
Tom, Helen, Colin & Martyn
--
Dr Tom Burn
le from Keele
University (£70/room/night; available on registration).
Best wishes,
Tom, Helen, Colin & Martyn
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Ruther
)
Powerfit: Fast and sensitive rigid-body fitting into cryo-EM density maps
Maya Topf (Birkbeck)
FlexEM: fitting and refinement of atomic structures guided by cryoEM density
Best wishes,
Tom and the CCP-EM team
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem
structures guided by cryoEM density
Best wishes,
Tom
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex At Harwell
Rutherford Appleton Laboratory, R92
OX11 0FA
01235 56 7871
:
http://www.cvent.com/d/9tq4ln
Registration fees:
PI/Industrial: £175.00
Student/PostDoc: £100.00
We have also ensured reasonably priced accommodation is available from Keele
University (£70/room/night; available on registration).
Best wishes,
Tom, Helen, Colin & Martyn
--
Dr Tom
ion is available from Keele
University (£70/room/night; available on registration).
Best wishes,
Tom, Helen, Colin & Martyn
--
Dr Tom Burnley, PhD
CCP-EM | @ccp_em <https://twitter.com/ccp_em>* | *www.ccpem.ac.uk
Science and Technology Facilities Council (STFC)
The Research Complex
with the national EM facility (eBIC / DLS). For informal enquiries please
contact myself: Tom Burnley (tom.burn...@stfc.ac.uk) or Martyn Winn
(martyn.w...@stfc.ac.uk).
All the best,
Tom
Job description:
This opening is a great opportunity that combines two of the most exciting
subjects in life science
Dear all,
If you are interested in cryoEM The CCP-EM Spring Symposium is now live. The
meeting is similar in style and content to the CCP4 Study Weekend.
You can watch talks live using:
https://livestream.com/accounts/9771311/events/8144974
The full schedule is here:
For EM curious crystallographers we are running an introduction to Relion for
EM image processing...
Dear all,
We are pleased to announce two one-day workshops introducing the basics of
RELION 3 led by developer and structural biologist Rafael Fernandez-Leiro
(Spanish National Cancer
Dear Suchi,
For questions on Relion (and other EM related things) best to try the CCP-EM
mailing list (and whilst your reposting I'll try and reproduce your bug on my
mac ):
https://www.jiscmail.ac.uk/CCPEM
Best wishes,
Tom
From: CCP4 bulletin board on
Dear all,
Just a quick reminder that registration for the Spring Symposium will close
this Friday (29th March).
Full details and talk titles can be found here:
http://www.cvent.com/d/xbqsqk
The Spring Symposium aims to provide a forum to highlight state of the art
developments in
Dear all,
Just a quick final reminder that registration for the Spring Symposium closes
today Friday (29th March).
Full details and talk titles can be found here:
http://www.cvent.com/d/xbqsqk
The Spring Symposium aims to provide a forum to highlight state of the art
developments in
Dear all,
A quick reminder that today is the last day to register an abstract for the
selected talks. If you are interested and haven't registered for the Symposium
please see here for full details:
http://www.cvent.com/d/xbqsqk
If you have already registered but haven't submitted an
. This 2 day course with
provide lectures and tutorials covering the basics of atomic modeling with
CCP-EM, Coot, Refmac, LocScale, Coot & Scipion.
Speakers/tutors include:
Tom Burnley (STFC), Jose María Carazo (CNB-CSIC), Ana Casañal (MRC-LMB), Paul
Emsley (MRC-LMB), Wojtek Galej (EMBL), A
Chojnowski (EMBL)
Tristan Croll (Cambridge)
Kevin Cowtan (York)
Judit Debreczeni (AstraZeneca)
Sony Malhotra (Birkbeck)
Garib Murshudov (MRC-LMB)
Rob Nicholls (MRC-LMB)
Maya Topf (Birkbeck)
Rangana Warshamanage (MRC-LMB)
Arjen Jakobi (TU Delft)
Tom Burnley (CCP-EM)
Agnel Joseph (CCP-EM)
The course
in cryoEM
Presenting work through international meetings and publications.
Please contact Tom Burnley (tom.burn...@stfc.ac.uk) if you have any queries
about this vacancy.
£38,318 - £46,576/Year
About You
You will be a highly motivated and experienced computational scientist with a
track record
Dear all,
Registration is now open for the CCP-EM Spring Symposium and full details are
available here:
http://www.cvent.com/d/8hqsdb
CCP-EM are proud to announce the sixth annual 'CCP-EM Spring Symposium'. The
conference aims to provide a forum to highlight state of the art developments
in
Dear all,
Please note we have extended the early bird registration period for the CCP-EM
Spring Symposium untill this Friday, 21st February. After that the
registration fee will increase!
Full details are available here:
http://www.cvent.com/d/8hqsdb
CCP-EM are proud to announce the sixth
Dear all,
Final day for CCP-EM Spring Symposium early bird registration!
Last day for early bird registration is today - Friday, 21st February. After
that the registration fee will increase!
Full details are available here:
http://www.cvent.com/d/8hqsdb
CCP-EM are proud to announce the
Jakobi (TU Delft)
Tom Burnley (CCP-EM)
Agnel Joseph (CCP-EM)
The course will be held at the RAL / Diamond campus, Harwell, UK, site of the
eBIC national facility. Registration is £300 and we will provide food and
accommodation at the Bear Hotel in nearby Wantage for nights of 16th (if
required
Dear all,
Two more days left for CCP-EM Spring Symposium early bird registration.
Last day for early bird registration is tomorrow - Friday, 21st February.
After that the registration fee will increase!
Full details are available here:
http://www.cvent.com/d/8hqsdb
CCP-EM are proud to
Save the date - CCP-EM Spring Symposium - 27-29th April 2020
*** Registration will open soon ***
CCP-EM are proud to announce the sixth annual 'CCP-EM Spring Symposium'. The
conference aims to provide a forum to highlight state of the art developments
in computational cryoEM and related
Dear all,
This might be of interest to crystallographers also interested in cryoEM...
We are delighted to announce that we will host an online version of the CCP-EM
Spring Symposium and Diamond Light Source Biological Cryo-imaging User Meeting
for eBIC and B24. Confirmed speakers include:
site visits and video conferencing
Keeping up to date with the latest methodology developments in cryoEM
Presenting work through international meetings and publications.
Please contact Tom Burnley (tom.burn...@stfc.ac.uk) if you have any queries
about this vacancy.
£38,318 - £46,576/Year
About You
Hi Herman,
There is lots of information on CCP-EM's modelling tools here:
https://www.ccpem.ac.uk/training/icknield_2019/icknield_2019.php
This includes a tutorial on Refmac. As you note this is done in reciprocal
space but the CCP-EM pipeline handles conversions from MRC to MTZ format
Nachricht-
Von: CCP4 bulletin board Im Auftrag von Tom Burnley -
UKRI STFC
Gesendet: Mittwoch, 29. Juli 2020 18:51
An: CCP4BB@JISCMAIL.AC.UK
Betreff: Re: [ccp4bb] AW: [EXTERNAL] Re: [ccp4bb] real real-space-refinement
EXTERNAL : Real sender is owner-ccp...@jiscmail.ac.uk
Hi Herman,
The
Dear all,
A quick reminder that the CCP-EM Spring Symposium will take place online next
week.
The conference will be held as a Zoom webinar series on 20-23th April 2021 and
is kindly supported by Quantifoil. Registration is free and available here:
Dear all,
A quick reminder that the CCP-EM Spring Symposium starts today. Full schedule
is here:
https://www.ccpem.ac.uk/downloads/symposium/ccp-em_symp_schedule_2021.pdf
and registration is free and open here:
https://ukri.zoom.us/webinar/register/WN_p_s9-m73TnK0VYdjWT1stg
All the best,
Dear CCP-EM,
CCP-EM are pleased to announce the eighth annual 'CCP-EM Spring Symposium',
3-5th May 2022. The conference aims to provide a forum to highlight state of
the art developments in computational cryoEM and related themes as well as
showcasing outstanding recent biological
x?id=dLonnQABDU2B_x1yja6N9k2iEV9rkoVBsESt7IZg17BUMk9XVzdDTUoyMTJERUg1N1JZUURFRzZKSy4u
All the best from CCP-EM & DLS BCI
From: Collaborative Computational Project in Electron cryo-Microscopy
on behalf of Tom Burnley - STFC UKRI
<740061e4cf9b-dmarc-requ...@jiscmail.
Dear all,
Final reminder that registration for the CCP-EM Symposium closes today (Friday
24th March).
Registration link and more conference details here…
https://www.ccpem.ac.uk/training/spring_symposium_2023/spring_symposium_2023.php
* Applying for a talk
As in previous years we are seeking
hort
justification).
We will confirm bursary awards next week.
All the best from CCP-EM & DLS BCI
From: Collaborative Computational Project in Electron cryo-Microscopy
on behalf of Tom Burnley - STFC UKRI
<740061e4cf9b-dmarc-requ...@jiscmail.ac.uk>
Sent:
Dear all,
We are pleased to announce the 9th Annual CCP-EM Spring Symposium. The
conference aims to provide a forum to highlight state-of-the-art developments
in computational cryoEM and related themes, as well as showcasing outstanding
recent biological applications. We aim to promote an
Dear all,
A quick reminder that the CCP-EM Spring Symposium starts today at 1pm (UK) with
the Diamond Light Source Biological Cryo-imaging User Meeting.
We have some great speakers over the next three days, see the full schedule (UK
times):
Quick reminder - last call for CCP4 Study Weekend in person registration is
today (Monday 4th Dec)!
From: CCP4 bulletin board on behalf of Karen McIntyre -
STFC UKRI <6f4fce69ead1-dmarc-requ...@jiscmail.ac.uk>
Sent: 01 December 2023 14:31
To: ccp4bb
Dear all,
We are pleased to announce the 10th Annual CCP-EM Spring Symposium! The
conference aims to provide a forum to highlight state-of-the-art developments
in computational cryoEM and related themes, as well as showcasing outstanding
recent biological applications. We aim to promote an
Dear all,
** We have additional bursary places and have extended the bursary deadline to
Monday 4th March **
This is thanks to kind support from: CryoCloud, CryoSol, Dectris, Quantum
Detectors, Nanosoft, SubAngstrom and Thermo Fisher Scientific.
The bursaries will cover registration fee and
Hi all,
Just a reminder that the earlier bird registration for the Symposium closes end
of Monday 11th, after than the conference fees will increase:
Conference fees
PhD/PDRA Early Bird: £150.00
Standard Early Bird: £200.00
PhD/PDRA: £200.00
Standard: £250.00
Registration
Hi all,
Final reminder that earlier bird registration for the Symposium/BCI meeting
closes at the end of today (Mon 11 March)
All the best,
Tom
From: Burnley, Tom (STFC,RAL,SC)
Sent: 08 March 2024 13:55
To: ccpem mailing list
Cc: ccp4bb ; 3...@ncmir.ucsd.edu
Hi all,
Quick reminder that in person registration for the Symposium closes tomorrow
(Friday 29th March).
Virtual registration will remain open but if you would like to attend in person
please register now if you haven't already.
Registration page:
https://cvent.me/Q1QANv
Please note we
Hi everyone,
We're looking forward to the 10th CCP-EM Spring Symposium & BCI User Meeting
next week.
If you aren't able to make it person you can still register as a virtual
delegate
Registration page:
https://cvent.me/Q1QANv
N.B. virtual registration is free and you'll be able which the
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