Dear Schulze-Gahmen,
Which version of coot did you use?
For me, Coot 0.8.4 works well in windows 8.1 system. It does not have a
question in optimizing nucleic acids.
best,
Zhonghao
chenzhonghao...@163.com
From: Ursula Schulze-Gahmen
Date: 2017-03-25 04:35
To: CCP4BB
Subject: [ccp4bb
.
chenzhonghao...@163.com
From: Tanner, John J.
Date: 2017-07-18 00:34
To: CCP4BB
Subject: Re: [ccp4bb] A challenging Molecular replacement
Richard,
I can’t help you with 5XQL.
However, I can point out a recent structure from my group that might be useful
for teaching. The structure was solved by MR
Dear all,
I want to download PROMOTIF v 2.0 from your ftp server(IP address
128.40.46.11).
However, I can not visit it (ftp://128.40.46.11) because the ftp server was
shut down.
Moreover, I also sent emails to g...@uk.ac.ucl.bioc.bsm or
thorn...@uk.ac.ucl.bioc.bsm. However, both emails
Dear Raj,
Usually, fo-fc is the best way to show.
best,
chenzhonghao...@163.com
From: raj kumar
Date: 2017-12-19 13:07
To: CCP4BB
Subject: [ccp4bb] Electron density map for publications
Hi
Which electron density map (fo-fc or 2fo-fc) should I use for representing the
density
Dear CCP4 community,
I found that Refmac5 refined the temperature factor only by four modes (see
the bottom of the attached figure). However, no
grouped B-factor (one or two per residue instead of one per atom) was found.
Actually, PHENIX and CNS can do it. But we are not familiar with both
the structure if I used isotropic
temperature refinement.
Did refmac5 or other programs in CCP4 have similar functions like
one_adp_group_per_residue or two_adp_groups_per_residue in Phenix?
Any help would be highly appreciated!
chenzhonghao...@163.com
From: Eleanor Dodson
Date: 2024-01-05 23
Dear colleagues,
Thank you to everyone who responded.
Here is a short summary:
1.Refmac using isotropic B-factors with tight restraints
2. Add a TLS in refinement may help.
Best wishes,
chenzhonghao...@163.com
From: Tom Peat
Date: 2024-01-07 10:57
To: CCP4BB
Subject: Re: [ccp4bb
