Hi Friends, I have sucessfully used preference files for WinCoot for that last 8 years across 3 laptops, but with this new laptop it's not working. It looks like the files are read, but I don't see the output in the terminal to indicate that it has any effect. And the preferences are not updated. I've always put coot.py and coot_preferences.py into C:\WinCoot\.coot-preferences. I've attached my preferences files and the terminal output. Any ideas what changed? I'm using Wincoot 0.9.8.1.
These are the commands I'm most interested in having run on each startup:
set_show_symmetry_master (1)
set_show_environment_distances (1)
set_environment_distances_label_atom (1)
set_refine_ramachandran_angles (1)
set_default_initial_contour_level_for_map (1)
set_nomenclature_errors_on_read ("ignore")
Thanks!
-David
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coot_preferences.py
Description: Binary data
coot.py
Description: Binary data
C:\WinCoot>title WinCoot
C:\WinCoot>set COOT_PREFIX=C:\WinCoot\
C:\WinCoot>set COOT_GUILE_PREFIX=C:/WinCoot/
C:\WinCoot>set COOT_HOME=C:\WinCoot\
C:\WinCoot>set COOT_BACKUP_DIR=C:\WinCoot\\coot-backup
C:\WinCoot>set COOT_SHARE=C:\WinCoot\\share
C:\WinCoot>if not exist "" (
echo no $CLIBD_MON found trying to setup CCP4
Call :setup_ccp4
)
no $CLIBD_MON found trying to setup CCP4
C:\WinCoot>For /F "Skip=1 Tokens=2*" %A In ('Reg Query
"HKLM\SOFTWARE\WOW6432Node\CCP4-7" /V "InstallDir" 2>Nul') Do Set "CCP4Dir=%~B"
C:\WinCoot>REM find latest dir
C:\WinCoot>FOR /F " tokens=*" %i IN ('dir "\7.*" /b /ad-h /t:c /od') DO SET
vers=%i
File Not Found
C:\WinCoot>REM setup ccp4
C:\WinCoot>call "\\ccp4.setup.bat"
The filename, directory name, or volume label syntax is incorrect.
C:\WinCoot>Exit /B 0
C:\WinCoot>if not exist "" (
echo no $CLIBD_MON found setting COOT_REFMAC_LIB_DIR
set COOT_REFMAC_LIB_DIR=C:\WinCoot\\share\coot\lib
)
no $CLIBD_MON found setting COOT_REFMAC_LIB_DIR
C:\WinCoot>set COOT_SCHEME_DIR=C:\WinCoot\\share/coot/scheme
C:\WinCoot>set
COOT_STANDARD_RESIDUES=C:\WinCoot\\share\coot\standard-residues.pdb
C:\WinCoot>set COOT_PIXMAPS_DIR=C:\WinCoot\\share\coot\pixmaps
C:\WinCoot>set COOT_RESOURCES_FILE=C:\WinCoot\\share\coot\cootrc
C:\WinCoot>set COOT_DATA_DIR=C:\WinCoot\\share\coot
C:\WinCoot>set COOT_REF_STRUCTS=C:\WinCoot\\share\coot\reference-structures
C:\WinCoot>set COOT_PYTHON_DIR=C:\WinCoot\\lib\python2.7\site-packages\coot
C:\WinCoot>REM set
COOT_REF_SEC_STRUCTS=C:\WinCoot\\share\coot\ss-reference-structures
C:\WinCoot>REM set PYTHONHOME=C:\WinCoot\\python27
C:\WinCoot>set
GUILE_LOAD_PATH=C:/WinCoot//share/guile/1.8;C:/WinCoot//share/guile;C:/WinCoot//share/guile/gtk-2.0;C:/WinCoot//share/guile/gui;C:/WinCoot//share/guile/www;C:/WinCoot//share/guile/site
C:\WinCoot>set SYMINFO=C:\WinCoot\\share\coot\syminfo.lib
C:\WinCoot>set
PATH=C:\WinCoot\\bin;C:\WinCoot\\lib;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\WINDOWS\System32\OpenSSH\;C:\Users\David\AppData\Local\Microsoft\WindowsApps;;C:\WinCoot\\bin\extras
C:\WinCoot>coot-bin.exe
There are 143 data in
C:/WinCoot//share/coot/lib/data/monomers/list/mon_lib_list.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/a/ALA.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/a/ASP.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/a/ASN.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/c/CYS.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/g/GLN.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/g/GLY.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/g/GLU.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/p/PHE.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/h/HIS.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/i/ILE.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/l/LYS.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/l/LEU.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/m/MET.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/m/MSE.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/p/PRO.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/a/ARG.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/s/SER.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/t/THR.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/v/VAL.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/t/TRP.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/t/TYR.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/p/PO4.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/s/SO4.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/g/GOL.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/c/CIT.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/e/EDO.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/a/A.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/c/C.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/g/G.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/u/U.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/d/DA.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/d/DC.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/d/DG.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/d/DT.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/h/HOH.cif
There are 2 data in C:/WinCoot//share/coot/lib/data/monomers/n/NA.cif
Spacegroup: P 1
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.475: couldn't load font
"Noto Sans Bold Not-Rotated 10.0615234375", falling back to "Sans Bold
Not-Rotated 10.0615234375", expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.491: couldn't load font
"Noto Sans Bold Not-Rotated 7.751953125", falling back to "Sans Bold
Not-Rotated 7.751953125", expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.504: couldn't load font
"Noto Sans Bold Not-Rotated 12", falling back to "Sans Bold Not-Rotated 12",
expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.521: couldn't load font
"Noto Sans Bold Not-Rotated 4", falling back to "Sans Bold Not-Rotated 4",
expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.526: couldn't load font
"Noto Sans Bold Not-Rotated 6", falling back to "Sans Bold Not-Rotated 6",
expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.574: couldn't load font
"Noto Sans Not-Rotated 15.1279296875", falling back to "Sans Not-Rotated
15.1279296875", expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.581: couldn't load font
"Noto Sans Not-Rotated 11.7470703125", falling back to "Sans Not-Rotated
11.7470703125", expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.624: couldn't load font
"Noto Sans Not-Rotated 10.6669921875", falling back to "Sans Not-Rotated
10.6669921875", expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.636: couldn't load font
"Noto Sans Not-Rotated 18.1640625", falling back to "Sans Not-Rotated
18.1640625", expect ugly output.
(coot-bin.exe:13456): Pango-WARNING **: 10:45:24.650: couldn't load font
"Noto Sans Not-Rotated 27.775390625", falling back to "Sans Not-Rotated
27.775390625", expect ugly output.
filter_fileselection_filenames_state ()
get_active_map_drag_flag ()
use_graphics_interface_state ()
INFO:: coot.py imported
INFO:: coot_python initialized
Running python script
C:/WinCoot//lib/python2.7/site-packages/coot/coot_load_modules.py
Good Morning David, Welcome to Coot version 0.9.8
set_display_intro_string ("Good Morning David, Welcome to Coot version 0.9.8")
BL INFO:: no $CCP4 found, wont setup CCP4 for Coot.
Coot Python Scripting GUI code found and loaded.
('debug menuitem_2', True)
Coot Python Scripting GUI code found and loaded.
use_graphics_interface_state ()
Running python script C:/WinCoot//.coot-preferences/coot.py
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:/WinCoot//.coot-preferences/coot.py", line 150, in <module>
set-show-symmetry-master (1)
NameError: name 'show' is not defined
Running python script
C:/WinCoot//.coot-preferences/coot_preferences.py
set_filter_fileselection_filenames (1)
set_sticky_sort_by_date ()
set_colour_map_rotation_on_read_pdb (21.00)
set_colour_map_rotation_on_read_pdb_c_only_flag (1)
set_density_size (12.60)
set_swap_difference_map_colours (0)
set_colour_map_rotation_for_map (14.00)
set_active_map_drag_flag (1)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:/WinCoot//.coot-preferences/coot_preferences.py", line
68, in <module>
no_coot_tips ()
NameError: name 'no_coot_tips' is not defined
filter_fileselection_filenames_state ()
get_active_map_drag_flag ()
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