Re: [COOT] Can't download pdb files nor density maps in WinCoot 0.9.8.1 EL

2023-06-10 Thread Dale Tronrud
Hi, I copied the file Paul recommended into lib/python2.7/site-packages/coot and I'm now able to download coordinates and maps from EBI from within 0.9.8.1 again. Thanks. This file doesn't work in 1.0.01 because that program uses python 3.8. Dale Tronrud On 6/8/2023 3:55 AM, Paul

Re: [COOT] Can't download pdb files nor density maps in WinCoot 0.9.8.1 EL

2023-06-08 Thread Bernhard Lohkamp
Hi Dale, The file link Paul sent should be the same WinCoot has. I believe the issue is with a relocation of the EDS files. I believe these are the ones you are after (fetch from EBI as such should work). No idea where/if EDS files are still available at the EBI. Maybe Sameer knows... B

Re: [COOT] Can't download pdb files nor density maps in WinCoot 0.9.8.1 EL

2023-06-08 Thread Paul Emsley
Hi Dale, Without testing, I guess that you can replace get_ebi.py with this one https://github.com/pemsley/coot/blob/refinement/python/get_ebi.py (use Raw of course) Paul. On 08/06/2023 08:35, Sameer Velankar wrote: CAUTION: This email originated from outside of the LMB. Do not click

Re: [COOT] Can't download pdb files nor density maps in WinCoot 0.9.8.1 EL

2023-06-08 Thread Sameer Velankar
Hi Dale The correct url for accessing files are as follows - 1. PDB file - https://www.ebi.ac.uk/pdbe/entry-files/pdb1cbs.ent 2. mmCIF file - https://www.ebi.ac.uk/pdbe/entry-files/1cbs.cif Kind regards Sameer > On 8 Jun 2023, at 07:25, Dale Tronrud wrote: > > Hi, > > When I click on