Bug#974729: mailcap 3.67: obsolete conffiles

2021-01-01 Thread Charles Plessy
cap` package was not marked obsolete. Is there a non-standard configuration on your system that could explain the difference ? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Tooting from work, https://mastodon.technology/@charles_plessy

Bug#979020: Please replace mime-support with media-types and mailcap in Recommends.

2021-01-01 Thread Charles Plessy
` and `neomutt` recommend `mime-support` for both functionalities. At your convenience, can you replace mime-support with media-types and mailcap in mutt and neomutt's Recommends ? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Tooting from work

Bug#978015: Add "image/webp webp" to /etc/mime.types ?

2020-12-27 Thread Charles Plessy
registration "paperwork", "administrative work" or "time investment" (as in the thread linked above). Registration is done through a simple web form, without the need to create an account. https://www.iana.org/form/media-types Have a nice day, Charles -- Charles Plessy

Bug#974851: mime-support: deprecated use of tempfile in run-mailcap

2020-12-27 Thread Charles Plessy
cter '\'. Dear Manoj, thank you for the report, I just prepared an update to correct that. And you are right that the warning only appears with some filenames tha do not require escape, as in that case run-mailcap is not going to make a temporary copy. Have a nice day, Charles --

Bug#930908: general: incorrect rules for %s in /etc/mailcap yielding potentially unquoted metacharacters

2020-12-10 Thread Charles Plessy
Control: close -1 > On 2020-11-27 23:44:43 +0900, Charles Plessy wrote: > > > > I would prefer to see these packages corrected than to have > > `update-mime` silently removing the errors. How about we ask the > > Lintian maintainers if they would feel li

Bug#930908: general: incorrect rules for %s in /etc/mailcap yielding potentially unquoted metacharacters

2020-11-27 Thread Charles Plessy
eassign this bug if they agree ? Have a nice week-end, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Nagahama, Yomitan, Okinawa, Japan

Bug#928037: mailcap(5): please document security considerations about %-escapes

2020-11-13 Thread Charles Plessy
Hi all, Le Fri, Nov 13, 2020 at 02:02:22AM +0100, Marriott NZ a écrit : > > In summary, mailcap is harmful. > And I won't feel safe until I can get rid of it. Rejoice ! I just split the package into two: - media-types provides /etc/mime-types, which is what most packages depend on

Bug#973343: metaphlan2-data: Can not be installed non-interactively

2020-10-29 Thread Charles Plessy
able. Maybe by just removing the dependency of med-bio to metahplan2-data there ? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work,

Bug#964850: Splitting mime-support into mailcap and media-types (Re: Bug#964850: ITP: mailcap -- Debian's mailcap system, and support programs)

2020-10-04 Thread Charles Plessy
Le Sat, Jul 11, 2020 at 01:48:55PM +0900, Charles Plessy a écrit : > > I plan to split the mime-support package into "mailcap" (this WNPP bug) > that will provide the mailcap system, optionally, and "media-types" > (ITP later), which will provide /etc/mime.types (P

Bug#964850: ITP: mailcap -- Debian's mailcap system, and support programs

2020-07-10 Thread Charles Plessy
Package: wnpp Severity: wishlist Owner: Charles Plessy * Package name: mailcap Version : 3.65 Upstream Author : the authors of the current mime-support package * URL : Will be hosted on Salsa * License : Public domain Programming Lang: Perl Description

Bug#964723: Ordering of entries: the calibre opens everything problem

2020-07-10 Thread Charles Plessy
ahead with the splitting of the mime-support package to facilitate that work. Please do not hesitate to ping me if I am too slow: I still am very limited in the amount of free time I have in front of the computer. Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-

Bug#964723: Ordering of entries: the calibre opens everything problem

2020-07-10 Thread Charles Plessy
Le Fri, Jul 10, 2020 at 02:02:31PM +0900, Charles Plessy a écrit : > > need a tool that draws information from /usr/share/applications instead > of /usr/lib/mime, and voilà we would just have to make xdg-open aware > of it. I just remembered it is more complicated: the FreeDesktop

Bug#964723: Ordering of entries: the calibre opens everything problem

2020-07-09 Thread Charles Plessy
happy to push major changes. Have a nice week-end, Charles -- Charles Plessy Akano, Uruma, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://mastodon.technology/@charles_plessy Tooting from home, https://framapiaf.org/@charles_plessy

Bug#958666: New lintian warning: mailing-list-obsolete-in-debian-infrastructure Debian Med Packaging Team

2020-05-03 Thread Charles Plessy
our users scripts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Akano, Uruma, Okinawa, Japan

Bug#956751: mummerplot incompatible with Debian's version of gnuplot

2020-04-15 Thread Charles Plessy
Package: mummer Version: 3.23+dfsg-4 Severity: normal mummerplot generates a gnuplot file that contains a line such as: set mouse clipboardformat "[%.0f, %.0f]" Unfortunately, it triggers `wrong option` errors with gnuplot 5. See also

Bug#956746: Perl compatibility error in mummerplot

2020-04-14 Thread Charles Plessy
Package: mummer Version: 3.23+dfsg-4 Severity: important Hello everybody, the `mummerplot` Perl script in the mummer package is broken because it contains some deprecated Perl syntax. The attached patch solves the problem. I am not sure if it is enough for a Stable update. In Sid, maybe it is

Bug#953046: Wrongly picks AZERTY layout when alternative Canadian layout is present.

2020-03-03 Thread Charles Plessy
Package: ibus-mozc Version: 2.23.2815.102+dfsg-4 Severity: normal Hi Nobuhiro, It has been years that I was affected with that bug, but I am only reporting it now as I found an (old!) workaround in Launchpad. I use GNOME with a Japanese keyboard, and I have 3 layouts configured; I switch

Bug#949795: mime-support: x-pascal mime type misses an extension

2020-02-07 Thread Charles Plessy
Dear Michael, > > Le Sat, Jan 25, 2020 at 09:06:43AM +0100, Michael Van Canneyt a écrit : > > > > > > Please consider changing the registration of text/x-pascal to > > > > > > text/x-pascal p pas pp > On Tue, 28 J

Bug#949795: mime-support: x-pascal mime type misses an extension

2020-01-28 Thread Charles Plessy
l media type to the IANA ? https://www.iana.org/form/media-types Have a nice day, -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#949992: Does not take subprocess down when killed

2020-01-28 Thread Charles Plessy
d > instead, as there is no purpose in leaving run-mailcap around. > However, if that is not possible, please make sure that the > subprocesses are killed when run-mailcap is killed. Hi Martin, would you have a chance to test this change on your system and submit a patch ? Have a nice day

Bug#946850: [Debian-med-packaging] Bug#946850: last-align ftbfs on non-x86 architectures

2019-12-18 Thread Charles Plessy
Le Wed, Dec 18, 2019 at 09:35:44AM +0100, Michael Crusoe a écrit : > > dcut dm --uid 724D609337113C710550D7473C26763F6C67E6E2 --allow last-align Hi Michael, I ran the commmand a bit more than one hour ago. My Debian skills are a bit rusty; I am not sure if I should receive an automatic email

Bug#946850: LAST build fails on non-amd64 platforms.

2019-12-17 Thread Charles Plessy
portability bugs such as this one). What would you prefer ? Have a nice day, Charles -- Charles Plessy Akano, Uruma, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://mastodon.technology

Bug#939587: /usr/sbin/update-mime: update-mime: Perl errors (or warnings ?)

2019-09-13 Thread Charles Plessy
TS: I did not notice the merge request before. Thanks Erwan for the report. Have a nice week-end, Charles -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#940066: debianutils should not call update-mime in its maintainer scripts.

2019-09-13 Thread Charles Plessy
no packages. > > Versions of packages mime-support recommends: > ii bzip2 1.0.8-2 > ii file 1:5.37-5 > ii xz-utils 5.2.4-1+b1 > > mime-support suggests no packages. > > -- no debconf infor -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#731599: About the license of the locfit package.

2019-07-13 Thread Charles Plessy
-project.org/web/packages/locfit/index.html (Please note that the bug address CCed is publicly archived) Charles Plessy and Andreas Tille, for the Debian Med project.

Bug#931300: mime-support: update-mime incorrectly handles MimeType containing empty elements

2019-07-03 Thread Charles Plessy
7f74720c6ff4da3e1f94a Author: Alex Riesen Date: Wed Jul 3 21:54:55 2019 +0900 update-mime: softly reject empty media types Closes: #931300 Signed-off-by: Charles Plessy I will only upload the package after the end of the Freeze, hopefully soon :) Have a nice day, Charles -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#931300: mime-support: update-mime incorrectly handles MimeType containing empty elements

2019-07-01 Thread Charles Plessy
Control: clone 931300 -1 Control: reassign 931300 mime-support Control: retile 931300 mime-support: update-mime incorrectly handles MimeType containing empty elements Control: found 931300 3.60 Le Mon, Jul 01, 2019 at 10:21:24PM +0900, Charles Plessy a écrit : > Control: clone -1 > C

Bug#931300: mime-support: update-mime incorrectly handles MimeType containing empty elements

2019-07-01 Thread Charles Plessy
? In that case, would you have time to propose an updated patch ? Have a nice day, Charles -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#931300: mime-support: update-mime incorrectly handles MimeType containing empty elements

2019-07-01 Thread Charles Plessy
ey "MimeType" in group "Desktop Entry" contains value "" which is an invalid MIME type: "" does not contain a subtype I am not sure if this warrants a stable update, but at least I wanted to let you know the issue. Have a nice day, Charles -- Charles Plessy http://www.debian.org/devel/debian-med Akano, Uruma, Okinawa, Japan

Bug#927300: /etc/mime.types should know about .mjs extension for JavaScript modules

2019-04-26 Thread Charles Plessy
js suffix to the existing application/javascript entry. The package will be uploaded after the release of Buster. Have a nice week-end, -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#927300: /etc/mime.types should know about .mjs extension for JavaScript modules

2019-04-25 Thread Charles Plessy
Le Thu, Apr 25, 2019 at 04:27:04PM +0200, Basile Starynkevitch a écrit : > > Or are you suggesting that both Chrome and FireFox are buggy, because they > accept wrongly (and work well in practice) JavaScript /modules/ with .mjs > associated to text/javascript (and that works /as documented/ here

Bug#927300: /etc/mime.types should know about .mjs extension for JavaScript modules

2019-04-25 Thread Charles Plessy
e, we have time sinze Debian is frozen :) Have a nice day, -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#485330: Non-unified patches and dpkg source format ‘3.0 (quilt)’.

2019-02-23 Thread Charles Plessy
Le Sun, Feb 24, 2019 at 02:28:39AM +0100, Guillem Jover a écrit : > > Having a single format (well including git formatted patches as > extensions to the unified format) looks like a rather good property > to me. And given that we have survived until now w/o the need for > context diffs, and that

Bug#922751: RM: bedtools [mips s390x] -- ROM; Buggy on non-little-endian platforms

2019-02-20 Thread Charles Plessy
Package: ftp.debian.org Severity: normal Dear FTP team, improvements on upstream regression tests suggest that bedtools probably never worked on platforms that are not little-endian. Therefore, I have restrictred the building of binary packages to our little-endian release architectures.

Bug#890117: bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol

2019-02-11 Thread Charles Plessy
Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Akano, Uruma, Okinawa, Japan

Bug#908832: Please include application/wasm MIME type for WebAssembly files

2019-02-03 Thread Charles Plessy
Control: tag -1 + pending Le Sun, Feb 03, 2019 at 06:55:45AM +0100, Josh Triplett a écrit : > > It's already on > https://www.iana.org/assignments/provisional-standard-media-types/provisional-standard-media-types.xhtml Thanks, it will be added with the next update. Have a nice day, --

Bug#908832: Please include application/wasm MIME type for WebAssembly files

2019-02-01 Thread Charles Plessy
e. Is there a chance that relevant people in charge for WebAssembly could submit their media type there ? Have a nice week-end, -- Charles Plessy Akano, Uruma, Okinawa, Japan

Bug#900288: mime-support: Add font/woff2 mimetype

2018-05-30 Thread Charles Plessy
I suppose it is too early to remove application/font-woff and the like? Have a nice day -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#886854: please create debian-r mailing list

2018-02-19 Thread Charles Plessy
us to join forces (which we are already doing on salsa with the r-pkg-team group). Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#889632: parallel: Option --nice not having effect anymore.

2018-02-04 Thread Charles Plessy
-c echo\ hello However, with the version in Stretch, it does not work anymore. $ parallel --version GNU parallel 20161222 [...] $ parallel -vv --dry-run --nice 10 echo ::: hello echo hello Cheers Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#886436: Rscript doesn't appear in package descriptions

2018-01-05 Thread Charles Plessy
Have a nice weekend, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#886114: Please support X-GitLab-Project in addition to X-Git-Repo.

2018-01-02 Thread Charles Plessy
everywhere). Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

2017-11-07 Thread Charles Plessy
(to be re-added) symbols file. Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#868558: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

2017-10-12 Thread Charles Plessy
without uploads is needed if we want to see the r-* packages in Testing. Note that according to the package tracker, r-base will be part of another transition soon. So it may be best to do the 5-day break before it starts. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Charles Plessy
Le Sat, Sep 30, 2017 at 04:52:32PM +0900, Charles Plessy a écrit : > The order of builds may matter (because of subtelties of the S4 system). > Have you tried rebuilding r-bioc-iranges in a system after the rebuilt > r-bioc-biocgenerics package was installed ? Sorry, I did not see that t

Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with new R changes behaviour

2017-09-30 Thread Charles Plessy
lt;https://support.bioconductor.org>. Cheers, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#872867: is ISO-3166 really the optimal list for our users?

2017-08-24 Thread Charles Plessy
phical location. Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#872867: is ISO-3166 really the optimal list for our users?

2017-08-23 Thread Charles Plessy
that if users do not find their country, it is because Debian could not find support for it. So it seems that the solution would be to move away from asking the user to enter country codes ? Otherwise, the propose disclaimer sounds like a good alternative. Also, the elephant in the room is that a

Bug#860568: iptraf-ng: cron spam due to duplicated logrotate rules

2017-08-19 Thread Charles Plessy
> /etc/cron.daily/logrotate: > error: iptraf-ng:2 duplicate log entry for /var/log/iptraf/rvnamed.log Hi all, isn't it because the transitional package iptraf contains /etc/logrotate.d/iptraf, and shouldn't this file be removed from the package ? Have a nice Sunday, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#867237: rakudo lost readline support.

2017-07-04 Thread Charles Plessy
the following messages when entering the REPL. You may want to `zef install Readline` or `zef install Linenoise` or use rlwrap for a line editor The `zef` program does not seem to be distributed in Debian. I there an easy way to re-enable readline support in perl6 ? Have a nice day, -- Charles

Bug#776557: debian-policy: Please clarify 2.5 'unix heritage >= important'

2017-07-04 Thread Charles Plessy
se which one would expect to find on > > | any Unix-like system. If the expectation is that an experienced Unix > > | person who found it missing would say "What on earth is going on, where > > | is foo?", it must be an important package. Le Thu, Jan 29, 2015 at 10:0

Bug#758234: debian-policy: allow packages to depend on packages of lower priority

2017-07-02 Thread Charles Plessy
the network, plus the bare minimum of commonly-expected and necessary tools to administrate the system. This does not include space-consuming features such as documentationa and multilingual support. (The last sentence above is there because man-db, debian-faq and locales are all priority:standard). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#861631: libinput10: Imposible to increase TrackPoint speed

2017-05-07 Thread Charles Plessy
Control: forwarded -1 https://bugs.freedesktop.org/show_bug.cgi?id=100965 Le Wed, May 03, 2017 at 11:00:36AM +0200, Julien Cristau a écrit : > > please file this upstream at > https://bugs.freedesktop.org/enter_bug.cgi?component=Input%2Flibinput=xorg > including your full X log and details about

Bug#861631: libinput10: Imposible to increase TrackPoint speed

2017-05-01 Thread Charles Plessy
Package: libinput10 Version: 1.6.3-1 Severity: normal Hello, I updated to Stretch yesterday, and now my TrackPoint is painfully slow. I tried to increase the speed in the GNOME contrl panel, but it had no effect. I am not entirely sure if it is a problem with GNOME not letting the user

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-05-01 Thread Charles Plessy
has been done until now. Not supporting partial upgrades puts the maintainers of the r-cran and r-bioc packages between the hammer and the anvil. This said, I think that we have made constant progresses over the years, so I do not feel shy saying "not yet" to the Release team again if ne

Bug#859255: binNMU needed for more R packages.

2017-04-30 Thread Charles Plessy
> On Sat, Apr 1, 2017 at 15:24:53 +0900, Charles Plessy wrote: > > > > as a follow-up to #858183, I looked at which other R Bioconductor > > packages were broken by R 3.3.3-1, and it seems that the previous round > > of binNMUs did not repair some of them. > &g

Bug#859255: binNMU needed for more R packages.

2017-04-29 Thread Charles Plessy
Le Sat, Apr 22, 2017 at 11:25:23PM +0900, Charles Plessy a écrit : > > Actually the rebuild was not enough and today I finally understood that > r-bioc-xvector also needs a rebuild (despite its own regression tests > did not fail). Unfortunately R in Sid is now ahead of Testing, and

Bug#859255: binNMU needed for more R packages.

2017-04-22 Thread Charles Plessy
> > Le Sat, Apr 01, 2017 at 03:24:53PM +0900, Charles Plessy a écrit : > >> > >> as a follow-up to #858183, I looked at which other R Bioconductor > >> packages were broken by R 3.3.3-1, and it seems that the previous round > >> of binNMUs did not

Bug#859255: binNMU needed for more R packages.

2017-04-12 Thread Charles Plessy
Le Sat, Apr 01, 2017 at 03:24:53PM +0900, Charles Plessy a écrit : > > as a follow-up to #858183, I looked at which other R Bioconductor > packages were broken by R 3.3.3-1, and it seems that the previous round > of binNMUs did not repair some of them. > nmu r-bioc-rsamtools_1.26

Bug#859255: binNMU needed for more R packages.

2017-04-01 Thread Charles Plessy
nomicalignments_1.10.0-1 . ANY . -m "Rebuild for R 3.3.3." Note to debian-science: there are also R CRAN packages that fail with R 3.3.3, (r-cran-lubridate, r-cran-spam), but I am not yet sure if a binNMU is enough. Have a nice day, Charles -- Charles Plessy Debian Med packaging team

Bug#848335: [Debian-med-packaging] Bug#848335: CI for filo (Was: Outreachy 2017 (Round 14))

2017-03-30 Thread Charles Plessy
Le Thu, Mar 30, 2017 at 09:41:47AM +0200, Andreas Tille a écrit : > On Thu, Mar 30, 2017 at 10:54:14AM +0900, Charles Plessy wrote: > > > * shuffle has for shure many possible alternatives elsewhere. > > Could you name some? Do we need to package something? `shuf`

Bug#858183: binNMU needed for r-bioc- packages broken by R 3.3.3.

2017-03-19 Thread Charles Plessy
.1-2 . ANY . -m "Rebuild for R 3.3.3." nmu r-bioc-iranges_2.8.1-1-m . ANY . "Rebuild for R 3.3.3." nmu r-bioc-genomicranges_1.26.2-1 . ANY -m "Rebuild for R 3.3.3." Otherwise I can prepare a more extensive list of packages to rebuild. Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#857466: marked as done (r-base: CVE-2016-8714: R: Buffer overflow in the LoadEncoding functionality)

2017-03-15 Thread Charles Plessy
Hi Dirk and Salvatore, > From: Dirk Eddelbuettel > On 11 March 2017 at 17:56, Salvatore Bonaccorso wrote: > | > | The relevant changes seem to be the following, but I might be mistaken. > (btw, > | is there a VCS repository for r-base or does upstream not share development > |

Bug#856675: euca2ools: Please remove me from uploaders list

2017-03-08 Thread Charles Plessy
Control: tag -1 pending Le Fri, Mar 03, 2017 at 07:07:18PM +, Miguel Landaeta a écrit : > > I used the package in the past and I had some interest on it, but I > never really worked on its maintenance since Charles has done a good job > during all these years. Thanks Miguel. I updated the

Bug#845565: Bug#853066: gnupg-agent: opens dialog on the wrong computer.

2017-01-31 Thread Charles Plessy
Control: reassign 853066 pinentry-gnome3 Control: reassign 845565 pinentry-gnome3 Control: forcemerge 845565 853066 841909 Le Tue, Jan 31, 2017 at 03:38:23PM +0100, Vincent Lefevre a écrit : > On 2017-01-31 22:57:07 +0900, Charles Plessy wrote: > > Control: forcemerge -1 845565

Bug#845565: Bug#853066: gnupg-agent: opens dialog on the wrong computer.

2017-01-31 Thread Charles Plessy
Control: forcemerge -1 845565 Le Sun, Jan 29, 2017 at 10:35:10PM +0900, Charles Plessy a écrit : > > when I am logged on my desktop computer directly with a GNOME shell > session, and remotly via SSH, attempts to use gpg from the SSH session > will open a popup on my desktop compu

Bug#853066: gnupg-agent: opens dialog on the wrong computer.

2017-01-29 Thread Charles Plessy
Package: gnupg-agent Version: 2.1.18-3 Severity: normal Hello, when I am logged on my desktop computer directly with a GNOME shell session, and remotly via SSH, attempts to use gpg from the SSH session will open a popup on my desktop computer's screen to enter the passphrase, which obviously

Bug#850037: r-cran-rsqlite: Row value IN queries give syntax errors.

2017-01-08 Thread Charles Plessy
's sqlite library. https://github.com/rstats-db/RSQLite/commit/8cdf941f4e0860be0c0dbafde0a64d1c5e75af72 Would it be possible to have this facility back ? Have a nice day, Charles Plessy PS: Andreas, to make it further complicated, the conversion from CDBS to dh_r caused the parameter to not be passed... To co

Bug#837379: mime-support: purge left files on system

2016-12-12 Thread Charles Plessy
ou sure that the problem is with mime-support, or could there be a problem with your piuparts installation ? Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#846579: src:bioperl: New version available

2016-12-02 Thread Charles Plessy
""""""" 88 88 "8a, ,a8" "8a, ,a8" "8a, ,a8" 88 aa]8I "8b, ,aa 88 88 `"YbbdP"' `"YbbdP"' `"YbbdP"' 88 `"YbbdP"' `"Ybbd8"' Please go ahead :) Thanks ! Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#845505: sra-sdk 2.7.0-1 is broken libncbi-vdb2 2.8.0+dfsg-1

2016-11-23 Thread Charles Plessy
Package: sra-sdk Severity: grave Hi all, quick note from work; sorry to not being able to go deeper. A colleague has reported to me that sra-sdk 2.7.0-1 is broken libncbi-vdb2 2.8.0+dfsg-1. For instance: fastq-dump fastq-dump: symbol lookup error: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so.2:

Bug#843099: boto package outdated because of authentification encryption "upgrade"

2016-11-03 Thread Charles Plessy
hot, there is no support for it (which means no correction of security bugs), but provided that you understand the issues with installing unsupported packages, it still may be useful for your purposes. http://snapshot.debian.org/package/python-boto/2.38.0-1/ I hope it helps. Have a nice day, C

Bug#831833: [Debian-med-packaging] Bug#831833: Tagged as fixed-upstream - do you intend to upload?

2016-11-03 Thread Charles Plessy
> On Wed, Nov 02, 2016 at 09:03:45PM +0900, Charles Plessy wrote: > > > > I was hoping that Upstream would make a new release with the fix :( > > > > So one would need to check if the following commit would be enough as a > > patch... > > > &

Bug#831833: Tagged as fixed-upstream - do you intend to upload?

2016-11-02 Thread Charles Plessy
Le Wed, Nov 02, 2016 at 12:52:58PM +0100, Andreas Tille a écrit : > > you have set #831833 as fixed-upstream at 20 Jul 2016. Do you intend to > upload the fix to the Debian archive? Hi Andreas, I was hoping that Upstream would make a new release with the fix :( So one would need to check if

Bug#841480: [pkg-eucalyptus-maintainers] Bug#841480: euca2ools: please release 3.3.1

2016-10-22 Thread Charles Plessy
Le Fri, Oct 21, 2016 at 09:26:41AM -0400, Scott Moser a écrit : > On Fri, 21 Oct 2016, Charles Plessy wrote: > > > > On my side, I do not manage to use the EC2 with euca2ools 3.3.1. I just > > opened an issue upstream. > > > > https://eucalyptus.atlassian.net/

Bug#841480: [pkg-eucalyptus-maintainers] Bug#841480: euca2ools: please release 3.3.1

2016-10-21 Thread Charles Plessy
Le Thu, Oct 20, 2016 at 09:10:21PM -0400, Scott Moser a écrit : > > So, I'm requesting a release of 3.3.1 to Debian that we would then sync > to Ubuntu. > > I've quickly done a build of euca2ools from git and trivially verified > that euca-describe-images is functional and euca-bundle-image

Bug#812544: r-base: FTBFS in a clean sid pbuilder enviromwent

2016-10-13 Thread Charles Plessy
Le Mon, Jan 25, 2016 at 07:44:16AM +0100, Tobias Frost a écrit : > > pdebuild --debbuildopts "-I -i -j4 -d" > > fails, a plain pbdebuild fails NOT... Hi Tobias and Dirk, the build fails because the "-j4" argument asks to build in parallel with up to 4 threads, but debian/rules currently does

Bug#695327: Patch pending for cloud-init bugs 838748, 780637 and 695327

2016-09-24 Thread Charles Plessy
Le Sat, Sep 24, 2016 at 03:34:52PM +0200, Nicolas Braud-Santoni a écrit : > Control: tag -1 pending > X-Debbugs-CC: hol...@debian.org > > Hi, > > I prepared an upload for a new version of cloud-init which fixes > (among other things) this bug. It is currently available in the > v0.7.8/master

Bug#836553: [Debian-med-packaging] Bug#836553: Bug#836553: poretools: short gpg key used in script

2016-09-04 Thread Charles Plessy
Control: forwarded -1 https://github.com/arq5x/poretools/pull/94 Le Sat, Sep 03, 2016 at 11:54:50PM -0700, Afif Elghraoui a écrit : > > على السبت 3 أيلول 2016 ‫15:34، كتب D Haley: > > > > Your package appears to contain commands which use a short gpg-key > > ID. These have recently been

Bug#832974: New upstream release available, needed to update euca2ools

2016-07-30 Thread Charles Plessy
Package: python-requestbuilder Version: 0.2.3-1 Severity: normal Hi all, To update euca2ools, I need a version of python-requestbuilder that has the requestbuilder.auth.aws module. I tried to prepare an update by myself, but got confused by the layout of the source package's git repository:

Bug#831833: Processed: Re: [Debian-med-packaging] bedtools is marked for autoremoval from testing

2016-07-26 Thread Charles Plessy
Control: tag -1 +sid Le Wed, Jul 27, 2016 at 05:03:05AM +, Debian Bug Tracking System a écrit : > Processing control commands: > > > notfound -1 2.25.0-1 > Bug #831833 [src:bedtools] bedtools groupby broken; will break users > pipelines. > Ignoring request to alter found versions of bug

Bug#831833: [Debian-med-packaging] bedtools is marked for autoremoval from testing

2016-07-26 Thread Charles Plessy
break users pipelines. This bug only affects the new upstream release. -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#698477: Prospective cloudfront.debian.*org* service (Re: Bug#698477 closed by Marcin Kulisz <deb...@kulisz.net> ())

2016-07-26 Thread Charles Plessy
Le Tue, Jul 26, 2016 at 12:21:10PM +, Debian Bug Tracking System a écrit : > This is an automatic notification regarding your Bug report > which was filed against the cloud.debian.org package: > > #698477: Debian Mirror on the Amazon cloud. > > It has been closed by Marcin Kulisz

Bug#831891: [Debian-med-packaging] Bug#831891: r-cran-dplyr: New upstream release v0.5.0

2016-07-20 Thread Charles Plessy
R package. So you will have to be patient, sorry ! Have a nice day, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#698477: Do we really need mirror in AWS?

2016-07-20 Thread Charles Plessy
he archive of the list and RFC7258 before quickly firing an answer explaining how idiotic I am to not understand that packages have fixted size and encryption will not ...). Have a nice day, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#831833: [Debian-med-packaging] Bug#831833: Command `groupby` broken; will break users pipelines.

2016-07-19 Thread Charles Plessy
Control: retitle -1 bedtools groupby broken; will break users pipelines. Control: forwarded -1 https://github.com/arq5x/bedtools2/issues/418 Control: tag -1 +confirmed Marking as forwarded now that commented in the issue. The command is completely broken, but unfortunately the regression tests

Bug#831833: Command `groupby` broken; will break users pipelines.

2016-07-19 Thread Charles Plessy
Source: bedtools Version: 2.26.0-1 Severity: serious Tags: upstream Hi all, at work I was just bitten by upstream issue 418, reporting that `bedtools groupby` is broken. https://github.com/arq5x/bedtools2/issues/418 I am filing this bug to prevent migration to Squeeze. Have a nice day, --

Bug#830266: r-base-dev: r-cran.mk should check for xauth, not just xvfb-run

2016-07-16 Thread Charles Plessy
Hi Dirk and Aaron, quick followup. Le Sun, Jul 10, 2016 at 03:02:44PM +0900, Charles Plessy a écrit : > > after reading the whole discussion, and looking at the history of the xvfb > package, I opened <https://bugs.debian.org/830661>, where I ask to change the > Recommends rel

Bug#830266: r-base-dev: r-cran.mk should check for xauth, not just xvfb-run

2016-07-10 Thread Charles Plessy
rchitectures, then I think that adding an ad-hoc test in r-cran.mk would be safe, although it is not the most satisfying solution. Have a nice Sunday, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan

Bug#830661: Please make xvfb depend on xauth, because the xvfb-run command needs it.

2016-07-09 Thread Charles Plessy
e xvfb Depend on xauth, so that the users of xvfb-run can rely on the fact that if it is installed, it will not fail? Not doing so means that any script running xvfb-run must also test that xauth is present. Have a nice Sunday, Charles -- Charles Plessy Debian Med packaging team, http://www.debi

Bug#823482: Option author-is-committer = False apparently ignored.

2016-06-19 Thread Charles Plessy
Le Sun, May 15, 2016 at 05:10:13PM +0200, Guido Günther a écrit : > On Sun, May 15, 2016 at 10:19:56AM +0900, Charles Plessy wrote: > > Le Sun, May 08, 2016 at 01:56:12PM +0200, Guido Günther a écrit : > > > severity 823482 wishlist > > > retitle 823482 Needs option comm

Bug#812475: r-base-core: .desktop file is not completely valid

2016-05-14 Thread Charles Plessy
s fixed. I am therefore closing the bug from version 3.2.3-6. Have a nice Sunday, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#823482: Option author-is-committer = False apparently ignored.

2016-05-14 Thread Charles Plessy
Le Sun, May 08, 2016 at 01:56:12PM +0200, Guido Günther a écrit : > severity 823482 wishlist > retitle 823482 Needs option committer-is-author to override getting author > from debian/changelog > thanks Hi Guido, I just figured out that the following command, ran after gbp import-dsc, does what

Bug#824085: Updated patch ready to commit to git

2016-05-14 Thread Charles Plessy
Le Fri, May 13, 2016 at 11:54:20AM +0200, Raphael Hertzog a écrit : > > Those changes will additionnaly make it possible to use > f...@packages.debian.org > (or future teams+...@tracker.debian.org) emails in package maintainer field > and have all co-maintainers subscribed through the Debian

Bug#823673: samtools: FTBFS in testing

2016-05-08 Thread Charles Plessy
equired a change recently for htslib 1.3.1. > However, if this only builds now with libhts >= 1.3.1, then the > Build-Depends field should be updated accordingly. Thanks for the report; the issue was already reported in #822701, which I just fixed by updating Build-Depends. Have a nice Sunday, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#823482: Option author-is-committer = False apparently ignored.

2016-05-08 Thread Charles Plessy
Le Sun, May 08, 2016 at 11:49:29AM +0200, Guido Günther a écrit : > > So the option does what it should but not what you want/need. You want > s.th. that overrides the author with the committer (and not vice versa), > correct? So we ought to add --committer-is-author (and turn this into a >

Bug#823482: Option author-is-committer = False apparently ignored.

2016-05-05 Thread Charles Plessy
Le Thu, May 05, 2016 at 01:57:03PM +0200, Guido Günther a écrit : > On Thu, May 05, 2016 at 04:19:44PM +0900, Charles Plessy wrote: > > > > [import-dsc] > > author-is-committer = False > > author-date-is-committer-date = False > > > > Is that a

Bug#823482: Option author-is-committer = False apparently ignored.

2016-05-05 Thread Charles Plessy
-committer` is actually doing ? Have a nice day, -- Charles Plessy -- System Information: Debian Release: 8.4 APT prefers stable APT policy: (900, 'stable'), (700, 'unstable'), (500, 'stable-updates'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 4.3.0-0.bpo.1-amd64 (SMP w/4

Bug#823480: Error: no "view" mailcap rules found for type "inode/directory"

2016-05-05 Thread Charles Plessy
would only have the error message. Are you expecting something different from `run-mailcap` ? Cheers, -- Charles Plessy Tsurumi, Kanagawa, Japan

Bug#820538: Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/%{ <-- HERE (.*?)}/ at /usr/bin/run-mailcap line 528.

2016-05-04 Thread Charles Plessy
p rules found for type "inode/directory" I can not reproduce this on my computer. Please open a separate bug if needed. Have a nice day, Charles -- Charles Plessy Tsurumi, Kanagawa, Japan

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