Bug#1039926: Will file bug report for complete R transition (Was: Bug#1039926: svglite requires rebuild under R 4.3.*)

2023-06-30 Thread Johannes Ranke
Hi, I think option 1 from [1] is the way to go, i.e. make r-base provide a graphics API version according to the R changelog, and have the relevant packages depend on that graphics API version. How to identify them was discussed previously on this list [2]. Using the codesearch and github URLS

Bug#1036308: r-base: R CMD check --as-cran fails for packages with math in help files

2023-05-18 Thread Johannes Ranke
Package: r-base Version: 4.3.0-1 Severity: normal Dirk, as recently discussed on the r-pkg-devel list[1], checking a package with using the --as-cran option fails when using R 4.3.0-1 currently sitting in unstable. Please apply the fix proposed by Ivan Kyrilov on the list, or, alternatively,

Bug#986186: postgresql-common: pg_dump does not talk to the last major version (11): Error: PostgreSQL version 9.6 is not installed

2021-04-14 Thread Johannes Ranke
Am Mittwoch, 14. April 2021, 17:36:19 CEST schrieb Christoph Berg: > Re: Johannes Ranke > > > > Everything should be detailed in > > > /usr/share/doc/postgresql-common/README.Debian.gz. > > > > How about inserting a pointer to this (very helpful and

Bug#986186: postgresql-common: pg_dump does not talk to the last major version (11): Error: PostgreSQL version 9.6 is not installed

2021-04-01 Thread Johannes Ranke
... > It would probably be a good idea to include the "-p 5433" argument in > the cluster selection algorithm - so far I refrained from doing that > in order not to create more corner cases, but I guess it just makes > sense. (And granted, -p 54NN is also how I select my local version NN >

Bug#986186: postgresql-common: pg_dump in bullseye does not talk to version 13

2021-03-31 Thread Johannes Ranke
Package: postgresql-common Version: 225 Followup-For: Bug #986186 After successfully dumping my database as described above, I upgraded the cluster to version 13 which worked nicely. However, when I run pg_dump with the upgraded cluster running on port 5433, I get LANG=C pg_dump -p 5433

Bug#986186: postgresql-common: pg_dump works after dropping the upgraded cluster

2021-03-31 Thread Johannes Ranke
Package: postgresql-common Version: 225 Followup-For: Bug #986186 OK, after I dropped the upgraded version 11 cluster, pg_dump works as expected. It still seems to me that that pg_dump/pg_wrapper needs a way to select the cluster it should talk to. Thanks, Johannes

Bug#986186: postgresql-common: pg_dump does not talk to the last major version (11): Error: PostgreSQL version 9.6 is not installed

2021-03-31 Thread Johannes Ranke
Package: postgresql-common Version: 225 Severity: normal Dear Maintainer, I have upgraded this buster system to bullseye. I did not do anything postgresql related during the upgrade and phppgadmin kept working, so I kept entering data with that. I think both clusters (11 and 13) were running at

Bug#982465: Debian bug report 982465: dyn.load not useful for system libraries

2021-02-18 Thread Johannes Ranke
Hi Dirk, Am Freitag, 19. Februar 2021, 00:27:33 CET schrieb Dirk Eddelbuettel: > severity 982465 wishlist I think the severity of the bug [1] depends on Debian policy - is it mandatory to use system libraries if they are available? Johannes [1]

Bug#981597: plasma-desktop: Same problem on a system set up with stretch

2021-02-18 Thread Johannes Ranke
I dug up my upgrade transcript, and it shows, after the first apt-upgrade $ apt full-upgrade Some packages could not be installed... ... Die folgenden Pakete haben unerfüllte Abhängigkeiten: libc6-dev : Beschädigt: libgcc-8-dev (< 8.4.0-2~) aber 8.3.0-6 soll installiert werden ... i.e. the

Bug#981597: plasma-desktop: Same problem on a system set up with stretch

2021-02-18 Thread Johannes Ranke
> I tend to close this bug ... any objections from other participants > here? I'd keep it open, as it is not clear where the problem comes from and it was observed on two independent systems. Maybe someone can figure it out before the official release. Johannes

Bug#983012: plasma-desktop: installing plasma-desktop does not pull kmix

2021-02-18 Thread Johannes Ranke
> The links to /usr/share/autostart are missing their targets. > OK, the problem with the links is a different bug https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=803523 Regarding the Volume applet, there is a competition between plasma-pa and kmix

Bug#981597: plasma-desktop: Same problem on a system set up with stretch

2021-02-18 Thread Johannes Ranke
Am Donnerstag, 18. Februar 2021, 09:58:59 CET schrieb Johannes Ranke: > I have a stretch chroot hanging around that I could upgrade to buster to see > if I can reproduce the problem. I just installed plasma-desktop on stretch and upgraded stretch -> buster -> bullseye with

Bug#983012: plasma-desktop: installing plasma-desktop does not pull kmix

2021-02-18 Thread Johannes Ranke
> Hmmm, I don't have kmix installed either ... but I do have a sound > applet in my systray. Oh, I see... > > Please add a dependency on kmix to plasma-desktop or to one of the > > packages it depends on, if this is more suitable. > > kmix doesn't help here, it must be something else that is

Bug#981597: plasma-desktop: Same problem on a system set up with stretch

2021-02-18 Thread Johannes Ranke
Am Donnerstag, 18. Februar 2021, 08:41:48 CET schrieb Norbert Preining: > Did you do dist-upgrade? I simple upgrade might not find a proper > solution because several packages need to be removed. I do remember that I tried apt full-upgrade and aptitude full-upgrade without success. > It is

Bug#983012: plasma-desktop: installing plasma-desktop does not pull kmix

2021-02-18 Thread Johannes Ranke
> Maybe it has to do with desktop-file-utils? kmix from bullseye/sid installs, among others: /etc/xdg/autostart/kmix_autostart.desktop /etc/xdg/autostart/restore_kmix_volumes.desktop On my system, I have me@box:/etc/xdg/autostart$ ls -lh .. lrwxrwxrwx 1 root root 43 18. Okt 2016

Bug#981597: plasma-desktop: Same problem on a system set up with stretch

2021-02-17 Thread Johannes Ranke
Package: plasma-desktop Version: 4:5.20.5-3 Followup-For: Bug #981597 I was recently upgrading my system originally set up as a stretch system, but running buster. I can confirm that I had to completely remove all kde related packages including plasma-desktop to be able to do the upgrade to

Bug#983012: plasma-desktop: installing plasma-desktop does not pull kmix

2021-02-17 Thread Johannes Ranke
Package: plasma-desktop Version: 4:5.20.5-3 Severity: important Dear Debian Qt/KDE maintainers, I had to reinstall plasma-desktop upon the upgrade to bullseye, see #981597. After reinstalling plasma-desktop, I had not sound applet in my task bar, and kmix was not installed. Please add a

Bug#982465: Bug in r-base and r-cran-rcppparallel

2021-02-11 Thread Johannes Ranke
> | > The documentation does not list a search behaviour for bare library > | > names on non-Windows systems. So completely ignoring the system library > | > paths is kind of weird. > | > | I can see that it looks weird - but is it a bug? > > Exactly. It has been like that since the 1990s

Bug#982465: Bug in r-base and r-cran-rcppparallel

2021-02-11 Thread Johannes Ranke
Am Donnerstag, 11. Februar 2021, 12:20:33 CET schrieb Bastian Blank: > Hi Johannes Hello Bastian! > On Thu, Feb 11, 2021 at 09:26:48AM +0100, Johannes Ranke wrote: > > dyn.load is used in base R to load compiled code from R packages. > > Can you show some examples please?

Bug#982465: Bug in r-base and r-cran-rcppparallel

2021-02-11 Thread Johannes Ranke
Am Mittwoch, 10. Februar 2021, 18:55:57 CET schrieb Bastian Blank: > Control: clone -1 -2 > Control: reassign -1 r-base 4.0.3-1 > Control: retitle -1 r-base: dyn.load not useful for system libraries dyn.load is used in base R to load compiled code from R packages. As far as I understand, system

Bug#961141: antimony: q

2020-06-28 Thread Johannes Ranke
Package: antimony Version: 0.9.3-1+b1 Followup-For: Bug #961141 Dear Maintainer, The package is currently unusable in Debian stable. I compiled my own package from the sources in unstable and was able to test antimony. Thanks for packaging antimony. Johannes -- System Information: Debian

Bug#948663: kdepim-runtime: account wizard cannot show kde widgets like KLineEdit

2020-01-11 Thread Johannes Ranke
Package: kdepim-runtime Version: 4:18.08.3-4 Severity: normal Dear Maintainer, on a freshly installed buster system I would like to configure my PIM accounts for use with kontact. Upon the first start of kontact, the account wizard starts. When I select kolab as the account type I would like to

Bug#910054: kmail: Fatal startup error: Could not create collection inbox, resourceId: 3

2020-01-11 Thread Johannes Ranke
Package: kmail Version: 4:18.08.3-1 Followup-For: Bug #910054 For what it's worth, I can confirm that this is still happening on a fresh buster install. -- System Information: Debian Release: 10.2 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture:

Bug#942431: akonadi-backend-mysql: Error during TagSync/ItemFetch faile: "Failed to store tag"

2019-10-16 Thread Johannes Ranke
Package: akonadi-backend-mysql Version: 4:18.08.3-5 Severity: normal Dear Maintainer, Since the upgrade to buster, I get error messages when starting akonadi from the command line. I am including the complete output below: me@box:~$ LANG=C akonadictl start Connecting to deprecated signal

Bug#930059: kmail: Fails to connect to IMAP server using starttls: "plain login is disabled by the server"

2019-06-06 Thread Johannes Ranke
Package: kmail Version: 4:18.08.3-1 Severity: normal After upgrading from stretch to buster, one IMAP resource stopped working. Long story short, it turned out that it worked again when switching from STARTTLS (port 143) to SSL/TLS (port 993). Unfortunately STARTTLS (port 143) is selected after

Bug#751414: [Debichem-devel] Bug#751414: rdkit: postgresql cartridge not built

2019-01-09 Thread Johannes Ranke
014 at 05:22:06PM +0200, Johannes Ranke wrote: > > Source: rdkit > > Severity: wishlist > > > > Dear Maintainer, > > > > It would be great to have access to the postgresql cartridge. Currently, > > it seems it is not being installed: > > > > p

Bug#898419: Fixed by installing okular-extra-backends

2018-05-11 Thread Johannes Ranke
When reading my own bug report I noticed that okular suggests okular-extra- backends. After installing this, I can correctly view multipage tiff files again. I am not sure if the packaging could be improved so that the user opening such a file would get a hint about the availability of this

Bug#891968: texlive-base should depend on xzdec as it is needed to initialise tlmgr

2018-03-05 Thread Johannes Ranke
> So maybe it is indirectly called via some other R function .. hard to > say. In any case, *this*should*not*be*done*. > > It would be nice to find out who actually called tlmgr. If you could > manage to find this it would help a lot. Thanks After many hours of digging (sigh): It is the

Bug#891968: texlive-base should depend on xzdec as it is needed to initialise tlmgr

2018-03-04 Thread Johannes Ranke
Am Sonntag, 4. März 2018, 16:17:27 CET schrieb Norbert Preining: > Hi > > > On a fresh Debian stretch installation, when trying to process a tex > > > document tlmgr could not be initialized because xzdec was not installed: > Very unlikely, because tlmgr is not used for processing *any* tex

Bug#891995: kaffeine: qInstant recording does not record anything

2018-03-03 Thread Johannes Ranke
Package: kaffeine Version: 2.0.5-1 Severity: normal Dear Maintainer, when I watch TV and press "Instant Recording", the message "Instant Record Started" gets displayed. When I stop it then, I get the message "Instant Record Stopped". However, no file appears in the directory configured for

Bug#891968: texlive-base should depend on xzdec as it is needed to initialise tlmgr

2018-03-03 Thread Johannes Ranke
Package: texlive-base Version: 2016.20170123-5 Severity: normal Dear Maintainer, On a fresh Debian stretch installation, when trying to process a tex document tlmgr could not be initialized because xzdec was not installed: /usr/bin/tlmgr: Initialization failed (in setup_unix_one):

Bug#889150: Confirmation

2018-02-28 Thread Johannes Ranke
Just a quick note from an affected user that installing apparmor and apparmor- profiles from stetch-proposed-updates and running sudo systemctl reload apparmor fixes the issue for me.

Bug#891554: Additional info

2018-02-26 Thread Johannes Ranke
It seems that the nouveau driver is not fit for modern KDEs use of OpenGL [1] as suggested in a comment to a different bug [2]. In my case the affected card is a GeForce GT 710 (MSI 1 GB D3 X GT710 LP passive). [1] https://bugs.freedesktop.org/show_bug.cgi?id=98039#c3 [2]

Bug#891554: okular: Desktop freezes when resizing the okular window

2018-02-26 Thread Johannes Ranke
Package: okular Version: 4:16.08.2-1+b1 Severity: important When I resize an okular window with or without a file opened, the whole desktop freezes. The mouse pointer still shows the resize symbol and I can move it around, but clicking does not do anything, and I can not select e.g. a konsole to

Bug#868558: Would you please not upload new r-* packages until transition is finalised (Re: r-api-3.4)

2017-10-12 Thread Johannes Ranke
Am Donnerstag, 12. Oktober 2017, 12:01:14 CEST schrieb Dirk Eddelbuettel: > So we did this 71 times, but stopped 4+ years ago. Not sure what got the > toolchain coughing, but I guess we could try again. texi2dvi used to trip over ~ in path names, so for locally building backports we used to

Bug#877283: rkward should depend on r-api-3.4

2017-09-29 Thread Johannes Ranke
Package: rkward Severity: normal Dear Maintainer, In order to get picked up by future transitions of the r-api such as the one planned for next year (R 3.5.0), I believe rkward should depend on r-api-3.4 which is currently provided by r-base in unstable. Johannes

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-07-18 Thread Johannes Ranke
Nice. Amazing work. So buster should be covered then. Now (correct me if I am wrong) if we could adapt your scripts to create versioned Breaks: relationships with these packages, this would open the possibility to create backports for stretch-backports and jessie-backports- sloppy, taking

Bug#863864: [Pkg-nagios-devel] Bug#863864: release-notes: Document that nagios is not in stretch and how to switch to icinga (if that is possible)

2017-06-05 Thread Johannes Ranke
Am Donnerstag, 1. Juni 2017, 11:52:24 CEST schrieb Baptiste Jammet: > Control: tags -1 moreinfo > > Hello all, > > Le 01/06/2017 09:26, Alexander Wirt a écrit : > > No, and those files are not fully compatible. > > Le 01/06/2017 10:00, Bas Couwenberg a écrit : > > Icinga 1.x uses the same

Bug#863864: release-notes: Document that nagios is not in stretch and how to switch to icinga (if that is possible)

2017-06-01 Thread Johannes Ranke
Package: release-notes Severity: normal I assume that switching to icinga is possible, but I am missing a hint in the release notes. Will icinga use nagios configuration files? -- System Information: Debian Release: 9.0 APT prefers testing APT policy: (500, 'testing') Architecture: amd64

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-05-04 Thread Johannes Ranke
Am Montag, 1. Mai 2017, 14:53:49 schrieb Charles Plessy: ... > At this point I see 3 options: > > - For each rebuild, insert a "Breaks" relationship in r-base's control > file; This is the solution favoured by me as the maintainer of the backports on CRAN (I know, this is the Debian BTS, but

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-04-27 Thread Johannes Ranke
> | Packages compiled locally can simply be rebuilt using > | > | update.packages(lib.loc="/usr/local/lib/R/site-library", > | checkBuilt=TRUE) > | > | However the packages provided by Debian packages are installed in a > | directory only writable by privileged users. > > That's irrelevant.

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-04-27 Thread Johannes Ranke
Package: r-base Version: 3.4.0-1 Severity: normal With current R, R packages built for Debian before the upload of R 3.3.3.20170413-1 on 14 April that use .C or .Fortran do no work properly, because the functions calling .C or .Fortran do not find the compiled objects. Example packages are

Bug#857446: gitolite3: The user 'gitolite' mentioned in README.Debian is not the default user

2017-03-11 Thread Johannes Ranke
Am Samstag, 11. März 2017, 13:11:16 schrieb David Bremner: ... > I agree that the documentation should mention the name of the default > user, but note that the mention of the user 'gitolite' is under the > "upgrading from gitolite v2', where it is indeed the default. Since v2 > is only present

Bug#857446: gitolite3: The user 'gitolite' mentioned in README.Debian is not the default user

2017-03-11 Thread Johannes Ranke
Package: gitolite3 Version: 3.6.1-2+deb8u1 Severity: minor Dear Maintainer, When cloning from a fresh default gitolite3 setup using git clone gitol...@mydomain.org:testing I was asked for a password. So I consulted the README.Debian to see if there are any Debian specifics, and found a hint

Bug#843534: (no subject)

2016-11-10 Thread Johannes Ranke
spot on! I was using apparmor on this machine without knowing it. I know I have looked into it one or two years ago... Removing apparmor and rebooting fixed my problem. Thanks everybody, happy hacking, Johannes

Bug#843534: akonadi-server: Workarounds don't work

2016-11-10 Thread Johannes Ranke
to load > defaults- file from? Doesn't seems so from changelog > > https://dev.mysql.com/doc/relnotes/mysql/5.5/en/news-5-5-53.html > > Best regards, > > sandro > > -- > > Am Donnerstag, 10. November 2016, 12:51:59 CET schrieb Johannes Ranke: > > When I

Bug#843534: akonadi-server: Workarounds don't work

2016-11-10 Thread Johannes Ranke
When I run the same command using strace, I get ... getcwd("/home/USERNAME/.local/share/akonadi", 510) = 34 stat("/home/USERNAME/.local/share/akonadi/mysql.conf", {st_mode=S_IFREG|0644, st_size=3486, ...}) = 0 open("/home/USERNAME/.local/share/akonadi/mysql.conf", O_RDONLY) = -1 EACCES

Bug#843534: akonadi-server: Workarounds don't work

2016-11-10 Thread Johannes Ranke
Also, when I do su mysql I can read the file without problems, e.g. cat mysql.conf works. signature.asc Description: This is a digitally signed message part.

Bug#843534: akonadi-server: Workarounds don't work

2016-11-09 Thread Johannes Ranke
Package: akonadi-server Version: 1.13.0-2+deb8u1 Followup-For: Bug #843534 I have added "secure_file_priv=" to ~/.local/share/akonadi/mysql.conf as suggested in the original bug report. This did not help. I also added this instruction to /etc/akonadi/mysql-global.conf. Finally, I have created

Bug#740707: okular: full-screen hangs depending on printer configuration

2016-09-17 Thread Johannes Ranke
Package: okular Version: 4:4.14.2-2 Followup-For: Bug #740707 Dear Maintainer, In my case, okular did not really freeze, but it showed me a grey screen for a long time (> 15 seconds) when I entered full-screen mode. This depends on the printer configuration. When the network is disabled, it

Bug#829190: /usr/share/texlive/texmf-dist/scripts/texlive/tlmgr.pl: tlmgr install fails: Unknown directive ...containerchecksum ...

2016-07-01 Thread Johannes Ranke
Package: texlive-base Version: 2014.20141024-2 Severity: normal File: /usr/share/texlive/texmf-dist/scripts/texlive/tlmgr.pl Dear Maintainer, I would like to install the most recent version of the metropolis package on Debian stable. So I did tlmgr init-usertree which created a fresh user

Bug#682232: [debian-mysql] Bug#682232: Failed upgrade of mysql from squeeze to wheezy

2016-03-07 Thread Johannes Ranke
> Hi Johannes! Thanks for taking the time to reach out. I'm struggling > to understand what the "bug" is. Config files that have been customized > have to be manually updated in any major upgrade. I don't think that's > specific to MySQL. Hi Clint, good question. It bugged me, because I did not

Bug#682232: Failed upgrade of mysql from squeeze to wheezy

2016-03-07 Thread Johannes Ranke
The skip-bdb option could be a leftover from much earlier times, as the box has started with Debian sarge in 2007...

Bug#682232: Failed upgrade of mysql from squeeze to wheezy

2016-03-07 Thread Johannes Ranke
Just for the record, maybe there are more people out there that are late upgrading their servers from squeeze to wheezy... When /etc/init.d/mysql start fails as described in this report, the command mysqld gives information on the command line what is going on. In my case, I had several

Bug#804823: Severity and title

2015-11-19 Thread Johannes Ranke
Package: kreversi Version: 4:4.13.1-1 Followup-For: Bug #804823 Control: severity -1 important Maybe other games are affected as well.

Bug#804823: kreversi: crashes on start

2015-11-19 Thread Johannes Ranke
Package: kreversi Version: 4:4.13.1-1 Followup-For: Bug #804823 Control: retitle -1 Fails to start due to missing dependency

Bug#804823: kreversi: crashes on start

2015-11-11 Thread Johannes Ranke
Package: kreversi Version: 4:4.13.1-1 Severity: grave Justification: renders package unusable Dear Maintainer, When I try to start kreversi on jessie, I get file:///usr/share/kde4/apps/kreversi/qml/Table.qml:107:5: Type CanvasItem unavailable CanvasItem { ^

Bug#804823: Only a dependency missing

2015-11-11 Thread Johannes Ranke
I just discovered that it runs fine after installation of kde-games-core-declarative Cheers, Johannes

Bug#804217: virt-viewer: Please package version 2.0

2015-11-06 Thread Johannes Ranke
versions of spice-gtk and spice-protocol as well. Kind regards, Johannes Ranke -- System Information: Debian Release: 8.2 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable'), (10, 'unstable'), (5, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures

Bug#782764: r-base-dev: Make it possible for maintainers to set builttimeStamp in d/rules

2015-04-18 Thread Johannes Ranke
Am Samstag, 18. April 2015, 06:27:03 schrieb Dirk Eddelbuettel: On 18 April 2015 at 11:15, Philip Rinn wrote: | Hi, | | I think this patch is more what I wanted. | It now sets the build-timestamp to the time of the last changelog entry if | the maintainer does not set builttimeStamp

Bug#781266: r-base-core: Package fails to install when there is no group names staff on the system

2015-03-26 Thread Johannes Ranke
: | pn ess none | iu r-base-html 3.1.1-1 | pn r-doc-info | r-doc-pdf none | pn r-mathlib none | | -- no debconf information -- PD Dr. Johannes Ranke Kronacher Str. 8 79639 Grenzach-Wyhlen -- To UNSUBSCRIBE, email to debian-bugs-dist-requ

Bug#751414: rdkit: postgresql cartridge not built

2014-06-12 Thread Johannes Ranke
Source: rdkit Severity: wishlist Dear Maintainer, It would be great to have access to the postgresql cartridge. Currently, it seems it is not being installed: postgres@mybox:~$ createdb test_rdkit postgres@mybox:~$ psql -c 'create extension rdkit' test_rdkit ERROR: could not open extension

Bug#695411: R sub() on arm

2014-02-01 Thread Johannes Ranke
Hi Dirk, I am only aware of a patch by someone that worked around this problem for a FTBFS, but Orion seems to have gone to the root of the problem. If tre would accept his patch and R core would make it possible to specify the system tre library as a configure option, this would be perfect!

Bug#726913: r-base-dev: does not use the dpkg-buildflags options for gfortran, specifically LDFLAGS

2013-12-15 Thread Johannes Ranke
Hi, On Sun, Dec 15, 2013 at 06:33:20PM -0600, Dirk Eddelbuettel wrote: On 15 December 2013 at 23:38, Julian Gilbey wrote: | On Sun, Dec 15, 2013 at 04:53:12PM -0600, Dirk Eddelbuettel wrote: | | Happy to help if you want me to ;-) Github repo or alioth repo would | | be fine. I can do

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-30 Thread Johannes Ranke
On Thu, Aug 29, 2013 at 09:17:20AM -0500, Dirk Eddelbuettel wrote: | It would be good if you could get some help, ideally from someone on | arm. Maybe you could contact the testers/porters? That doesn't always | help. Ideally we would also get help from R Core but I don't know how much |

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-29 Thread Johannes Ranke
| Is this report something we should keep here, or file on the R Bugzilla system? | | As the bug http://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15087 | that I think has the same cause was closed as being not reproducible, I | would prefer to know that someone can reproduce the

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-28 Thread Johannes Ranke
edd@max:~$ LANG= R -q -e 'data(Loblolly); head(Loblolly)' R data(Loblolly); head(Loblolly) height age Seed 14.51 3 301 15 10.89 5 301 29 28.72 10 301 43 41.74 15 301 57 52.70 20 301 71 60.92 25 301 R R edd@max:~$ Works here. Also: edd@max:~$ LANG= R

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-28 Thread Johannes Ranke
On Wed, Aug 28, 2013 at 06:14:23AM -0500, Dirk Eddelbuettel wrote: Oh, sorry, I missed that. I don't think I have access to an Arm box with R. And I had thought your patch had addressed that? I think I am still applying the patch. mhm, for this bug there was never a patch, only an

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-27 Thread Johannes Ranke
Package: r-base-core Version: 3.0.1-3~squeezecran3.0 Severity: normal The failure to load the datasets, as well as the wrong behaviour of sub depends on the locale settings. I get correct behaviour when exporting LANG=de_DE.UTF-8 before starting R. R 2.11.1 from squeeze is not affected.

Bug#702427: r-base-core causes FTBFS of elmerfem on arm*

2013-03-06 Thread Johannes Ranke
On Wed, Mar 06, 2013 at 06:16:25AM -0600, Dirk Eddelbuettel wrote: On 6 March 2013 at 15:52, Boris Pek wrote: | Package: r-base-core | Version: 2.15.2-1 | Severity: normal | | Hi, | | elmerfem is FTBFS on arm* again because of recent changes in r-base. | | After small investigation

Bug#695411: (no subject)

2013-01-07 Thread Johannes Ranke
bit over my head. As a reminder, the problem is this: Message-ID: 20130107213444.6883.35009.reportbug@qnap.local X-Mailer: reportbug 4.12.6 Date: Mon, 07 Jan 2013 22:34:44 +0100 R 2.15.2 compiled on Debian stable: sub(.*\\., , /path/to/file.ext) [1] ext R 2.15.2 compiled in a Debian unstable

Bug#695411: Fails to load built-in datasets on armel

2013-01-07 Thread Johannes Ranke
Package: r-base-core Severity: normal Sorry for the incomplete message. I had expressed that I think it would be good to have a test case written in C, that calls tre_regcomp(), tre_regwcomp() and tre_regexec() in a similar way as do_gsub() would do, which is the C function being called by sub().

Bug#695411: Fails to load built-in datasets on armel

2013-01-07 Thread Johannes Ranke
Package: r-base-core Severity: normal I have started on a test case (attached), but, as mentioned, I did not succeed to figure out exactly how the tre functions are being called under these circumstances. Any help would be appreciated. #include stdio.h #include tre/tre.h int main(int argc, char

Bug#695012: kde-workspace: Suspend not working after upgrade squeeze-wheezy

2012-12-17 Thread Johannes Ranke
Package: kde-workspace Version: 4:4.8.4-5 Followup-For: Bug #695012 Control: reassign pm-utils Dear maintainter(s) of pm-utils I believe kde-workspace depends on pm-utils for the suspend-resume process. I noticed that using pm-suspend from the command line has the same problem as described in

Bug#695012: kde-workspace: Suspend not working after upgrade squeeze-wheezy

2012-12-17 Thread Johannes Ranke
Package: kde-workspace Version: 4:4.8.4-5 Followup-For: Bug #695012 Control: reassign 695012 pm-utils Another try to reassign this bug report, with (hopefully) corrected syntax Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe.

Bug#695411: r-base-core: Fails to load built-in datasets on armel

2012-12-13 Thread Johannes Ranke
I just found a bug report with the same symptoms in the bugzilla http://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15087 and added the link to here. I added some more information on the bug in the R bugzilla, documenting that the sub() function behaves correctly when R 2.15.2 is

Bug#695411: r-base-core: Fails to load built-in datasets on armel

2012-12-07 Thread Johannes Ranke
Package: r-base-core Version: 2.15.2-1 Severity: normal Hi Dirk, while checking if R could be useful on my NAS, I noticed that the built-in datasets are not loaded. I am writing this bug report from a fresh sid chroot environment. A short version of the session I just had: R version

Bug#695411: r-base-core: Fails to load built-in datasets on armel

2012-12-07 Thread Johannes Ranke
| stackloss | Fehler: Objekt 'stackloss' nicht gefunden | data(stackloss) | Warning message: | In data(stackloss) : data set 'stackloss' not found | no data sets found | Any idea? Let me know what I can do to help. Hm. Sounds like we'd need an arm box to do

Bug#695411: r-base-core: Fails to load built-in datasets on armel

2012-12-07 Thread Johannes Ranke
| So I have the feeling maybe it should be discussed upstream why regular | expressions on arm behave so different (broken) and what should be done | about it (use PCRE, considering Adam Conrads viewpoint on #679180 ?). R Core is not too responsive these days to postings on r-devel. Maybe we

Bug#695008: installation-reports: Acer TM8371 nicely installed, partitioning could be improved, suspend to RAM broken

2012-12-03 Thread Johannes Ranke
Package: installation-reports Severity: normal Tags: d-i Dear Maintainer, As I was not concentrated during the disk partitioning process, the partition manager wanted to use my USB flash drive used for booting the installer for the system installation, and I only noticed when the partitioning

Bug#695012: kde-workspace: Suspend not working after upgrade squeeze-wheezy

2012-12-03 Thread Johannes Ranke
Package: kde-workspace Version: 4:4.8.4-4 Severity: normal Dear Maintainer, After a fresh installation of Debian wheezy on my ACER TravelMate 8371 laptop, suspend/resume is not working any more. Maybe it has to do with my package selection, as I used the list of installed packages in squeeze

Bug#695008: installation-reports: Acer TM8371 nicely installed, partitioning could be improved, suspend to RAM broken

2012-12-03 Thread Johannes Ranke
Hi, Am Montag, 3. Dezember 2012, 17:43:03 schrieb Brian Potkin: On Mon 03 Dec 2012 at 11:08:00 +0100, Johannes Ranke wrote: As I was not concentrated during the disk partitioning process, the partition manager wanted to use my USB flash drive used for booting the installer for the system

Bug#690275: python-indigo: Does not use the Hill convention for GrossFormula

2012-10-12 Thread Johannes Ranke
Hi ... I will take a look at uploading indigo-1.1.5 to experimental at least and then backporting it to squeeze, but the build system has changed since 1.0.0 (at least they are using CMake now, not some home-grown Makefiles), so it might take a bit. Sounds great! I would like to offer some

Bug#690275: python-indigo: Does not use the Hill convention for GrossFormula

2012-10-11 Thread Johannes Ranke
molecular weights to go with it and I am sure for many other chemoinformatics tasks. Kind regards, Johannes Ranke P.S.: I am actually using python-indigo and indigo-utils at work on a Debian stable system, so you can ignore the system information given below. -- System Information: Debian

Bug#503338: Installation of openjdk-6-jre fails in a lenny chroot

2009-02-16 Thread Johannes Ranke
Package: openjdk-6-jre Version: 6b11-9.1 Followup-For: Bug #503338 Trying to set up a chroot with openjdk-6-jre I get the following: stiller:~# apt-get install openjdk-6-jre Reading package lists... Done Building dependency tree Reading state information... Done openjdk-6-jre is already the

Bug#503338: openjdk-6-jre: Mounting /proc in the chroot helps...

2009-02-16 Thread Johannes Ranke
Package: openjdk-6-jre Version: 6b11-9.1 Followup-For: Bug #503338 Sorry for the noise, Johannes -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#503614: rpy: Missing build dependencies

2008-10-28 Thread Johannes Ranke
* Dirk Eddelbuettel [EMAIL PROTECTED] [081027 16:50]: On 27 October 2008 at 16:01, Johannes Ranke wrote: | * Dirk Eddelbuettel [EMAIL PROTECTED] [081027 09:10]: | | On 27 October 2008 at 00:23, Johannes Ranke wrote: | | Package: rpy | | Version: q | | Severity: normal

Bug#503614: rpy: Missing build dependencies

2008-10-27 Thread Johannes Ranke
* Dirk Eddelbuettel [EMAIL PROTECTED] [081027 09:10]: On 27 October 2008 at 00:23, Johannes Ranke wrote: | Package: rpy | Version: q | Severity: normal | | | Hi Dirk, | | Building my backport of rpy using pbuilder on amd64 (etch) fails (see below). Two commands are missing

Bug#503614: rpy: Missing build dependencies

2008-10-26 Thread Johannes Ranke
-buildpackage: source package is rpy dpkg-buildpackage: source version is 1.0.3-3~etchcran.2.8.0 dpkg-buildpackage: source changed by Johannes Ranke [EMAIL PROTECTED] dpkg-buildpackage: host architecture amd64 dpkg-buildpackage: source version without epoch 1.0.3-3~etchcran.2.8.0 fakeroot debian/rules clean

Bug#485747: bind9: Same problem with kernel 2.6.24 from sid

2008-06-12 Thread Johannes Ranke
Package: bind9 Followup-For: Bug #485747 I have the same problem with bind9 1:9.5.0.dfsg-1 using the current 2.6.24 kernel from sid (version 2.6.24-7) # grep CAPABILITIES /boot/config-2.6.24-1-amd64 CONFIG_SECURITY_CAPABILITIES=y CONFIG_SECURITY_FILE_CAPABILITIES=y I downgraded to 1:9.4.2-10,

Bug#360575: openoffice.org-writer: Culprit files

2008-04-03 Thread Johannes Ranke
Package: openoffice.org-writer Version: 1:2.4.0-3 Followup-For: Bug #360575 The problem hit me, I think with the upgrade to 2.4.0. I followed hungerburgs instruction, and after that, WebWizard does not appear any more in ~/.openoffice.org2/user/basic/dialog.xlc

Bug#469128: gchempaint: crashes on startup

2008-03-03 Thread Johannes Ranke
Segmentation fault Hope that the above is helpful to find the problem. Best, Johannes Ranke -- System Information: Debian Release: lenny/sid Architecture: amd64 (x86_64) Kernel: Linux 2.6.20-1-amd64 (SMP w/1 CPU core) Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) Shell: /bin/sh linked

Bug#465747: openbabel: Some man pages are missing

2008-02-29 Thread Johannes Ranke
* Daniel Leidert [EMAIL PROTECTED] [080228 01:40]: forwarded 465747 http://sourceforge.net/tracker/index.php?func=detailaid=1900675group_id=40728atid=428740 thanks Am Donnerstag, den 14.02.2008, 15:52 +0100 schrieb Johannes Ranke: Man pages are missing for the following executables

Bug#465747: openbabel: Some man pages are missing

2008-02-14 Thread Johannes Ranke
the two things into one bug report. I noticed that in the sourceforge svn the man pages are there, except the one for roundtrip. Maybe time for an upload of an svn version? Best regards, and thanks, Johannes Ranke -- System Information: Debian Release: lenny/sid APT prefers unstable APT policy

Bug#465608: education-chemistry: fails to install: err 67: Custom distribution education does not exist

2008-02-13 Thread Johannes Ranke
Package: education-chemistry Version: 0.824+svn40294 Severity: grave Justification: renders package unusable Setting up education-chemistry (0.824+svn40294) ... err 67: Custom distribution education does not exist dpkg: error processing education-chemistry (--configure): subprocess

Bug#463463: postinst fails if there is no /dev/shm/resolvconf/*

2008-01-31 Thread Johannes Ranke
Package: resolvconf Version: 1.38 Severity: important I wanted network-manager-dev and network-manager-kde, so something pulled resolvconf. When it failed to install I removed it, and then: stiller:/home/ranke# LANG=C apt-get install resolvconf Reading package lists... Done Building dependency

Bug#463463: Acknowledgement (postinst fails if there is no /dev/shm/resolvconf/*)

2008-01-31 Thread Johannes Ranke
OK, I purged the package and reinstalled without problems. I vaguely remember that I aborted debconf when resolvconf was pulled on a similar occasion. Best regards, Johannes * Debian Bug Tracking System [EMAIL PROTECTED] [080131 20:50]: Thank you for the problem report you have sent regarding

Bug#463348: rkward 0.4.9-2 does not start if there is no libRblas.so

2008-01-31 Thread Johannes Ranke
Hi, I can confirm this behavior on my amd64 unstable box. rkward needs to be recompiled, because it is linked to blas (although Thomas said blas symbols are not used anywhere). The same issue arose with rkward 0.5, and also with the R package mgcv, which is linked against blas. I am filing a bug

Bug#463374: r-cran-mgcv: library fails to load on amd64

2008-01-31 Thread Johannes Ranke
Package: r-cran-mgcv Version: 1.3-29-1 Severity: important After upgrading to R 2.6.1-2 I get library(mgcv) Error in dyn.load(file, ...) : unable to load shared library '/usr/lib/R/library/mgcv/libs/mgcv.so': libRblas.so: cannot open shared object file: No such file or directory This is

Bug#460745: New upstream version 0.4.9

2008-01-15 Thread Johannes Ranke
for command log and object viewer Thanks -- Marco Rodrigues http://Marco.Tondela.org -- Dr. Johannes Ranke [EMAIL PROTECTED] Key ID: F649AF90 UFT Bremen, Leobenerstr. 1 +49 421 218 63373 D-28359 Bremen http://www.uft.uni-bremen.de

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