Bug#1063752: custodian: Inappriate maintainer address

the bug. -- Nicholas Breen nbr...@debian.org

Bug#1061727: [Debichem-devel] Bug#1061727: gromacs: please add support for loong64

like me to do so? https://manual.gromacs.org/current/dev-manual/contribute.html -- Nicholas Breen nbr...@debian.org

Bug#1017480: RM: gromacs/experimental -- NVIU; ROM; not flagged by autocruft

Package: ftp.debian.org Severity: normal Please remove gromacs/2022.1-1 from experimental. There is a newer version in unstable, but on fewer architectures, which is probably how this missed the autocruft check. Thanks. -- Nicholas Breen nbr...@debian.org

Bug#1011392: RM: gromacs [armel armhf i386 mipsel] -- ROM, ANAIS; upstream support dropped for 32-bit archs

the binaries for those architectures at your convenience: gromacs, libgromacs6, libgromacs-dev, libnblib-gmx0, libnblib-gmx-dev. The only rdeps are the three old votca-{csg,tools,xtp} packages, for which separate RM bugs have already been filed. -- Nicholas Breen nbr...@debian.org

Bug#1011369: transition: gromacs

ort for 32-bit architectures in the new release, so that will need an additional RM bug for old binaries, not yet filed. Should I proceed with an upload to sid when a slot is ready, or wait for one or both of those removals to clear first? Thanks. -- Nicholas Breen nbr...@debian.org

Bug#1010501: RM: votca-tools -- ROM; superceded by votca

Package: ftp.debian.org Severity: normal The recent acceptance of src:votca into the archive (thank you!) covers an upstream merger of its formerly separate components: votca-tools, votca-csg, and votca-xtp. Please remove those three when convenient. -- Nicholas Breen nbr...@debian.org

Bug#1009383: gromacs: FTBFS: AttributeError: module 'collections' has no attribute 'Iterable'

tags 1009383 + pending thanks Fix pending in git, which is (preferably) waiting on upload until votca finally clears NEW -- Nicholas Breen nbr...@debian.org

Bug#1000714: muparser: Please update to latest upstream version 2.3.2

ser. -- Nicholas Breen nbr...@debian.org diff --git a/debian/changelog b/debian/changelog index c48b85d..45589aa 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,12 @@ +muparser (2.3.3-0.1) unstable; urgency=medium + + * Non-maintainer upload. + * New upstream release. + * Drop patc

Bug#1000714: muparser: Please update to latest upstream version 2.3.2

to be dropped. I did not look into the dpkg-gensymbols problem that was reported earlier, though. Thank you! -- Nicholas Breen nbr...@debian.org diff --git a/debian/changelog b/debian/changelog index c48b85d..33a989b 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,11

Bug#855461: esniper: again fails to login

with bullseye in this state. -- Nicholas Breen nbr...@debian.org

Bug#980943: mipch: mpirun segfaults on s390x

Package: mpich Version: 3.4-5 Severity: important User: debian-s...@lists.debian.org Usertags: s390x X-Debbugs-Cc: debian-s...@lists.debian.org Affects: gromacs Hi, mpirun from mpich 3.4-5 (and possibly other versions, this is the only one I tested) segfaults immediately on s390x: % mpirun

Bug#980634: [Debichem-devel] Bug#980634: gromacs: FTBFS: Errors while running CTest

g (thanks Alistair!). It's possible that this is another iteration of #980033 on ucx, except that it affected MPICH instead of OpenMPI here. Not sure enough about that to merge the bugs. I can successfully build the OpenMPI portion of gromacs in sid right now. -- Nicholas Breen nbr...@debian.org

Bug#973639: [Debichem-devel] Bug#973639: closed by Debian FTP Masters (reply to Nicholas Breen ) (Bug#973639: fixed in gromacs 2021~beta2-1)

sion of the source package overall. But yes, definitely the correct long-term fix, possibly short-term as well. -- Nicholas Breen nbr...@debian.org

Bug#960640: bash-completion: dh_bash-completion needs to record installed files for dh_missing

Hello Gabriel, As an example package demonstrating this bug, I encountered it when preparing votca-csg 1.6.2-1. Removing the workaround in debian/rules (lines 29 and 30) causes a build failure with debhelper compat 13. Thanks! -- Nicholas Breen nbr...@debian.org

Bug#965169: O: jigl -- Generates a static html photo gallery from one or more directories of images

and EXIF info for each image in a simple clean layout. I haven't used it for some years; it's not a difficult package, though long-dead upstream, and with a late-'00s packaging style that could use an overhaul. -- Nicholas Breen nbr...@debian.org

Bug#964910: RM: jigl -- ROM; dead upstream, low popcon, alternatives exist

On Mon, Jul 13, 2020 at 04:55:36PM -0700, Sean Whitton wrote: > control: tag -1 + moreinfo > > Hello Nicholas, [...] > Is there any reason to think the software no longer works? > > Otherwise, perhaps it would be better if you were simply to orphan it. Hi Sean, It does still work (modulo

Bug#964910: RM: jigl -- ROM; dead upstream, low popcon, alternatives exist

+imageindex_installed=on_legend=on_date=2010-01-01_date=_date=_fmt=%25Y=1 -- Nicholas Breen nbr...@debian.org

Bug#959946: grace: fails to start: failed request: 12 (X_ConfigureWindow)

gt; Value in failed request: 0x0 > Serial number of failed request: 2821 > Current serial number in output stream: 2822 Hello Drew, I cannot reproduce this on any of three systems. If you have a residual /etc/X11/app-defaults/XMgrace, can you try removing it? Can you generate a log

Bug#955770: grace: fix of bug #727796 is a regression

provide an example in > the docs. The example file could contain precisely the fallback values, then > the user could edit just the relevant bits. This seems reasonable. I feel like very, very few people are customizing their Xresources file in the current day. -- Nicholas Breen nbr...@debian.org

Bug#949669: [Debichem-devel] Bug#949669: votca-csg ftbfs with gromacs 2020-2

tags 949669 + pending thanks On Thu, Jan 23, 2020 at 01:55:14PM +0100, Paul Gevers wrote: > Source: votca-csg > Version: 1.5.1-1 > Severity: serious > Justification: ftbfs > Tags: ftbfs sid bullseye > > Dear maintainer, > > gromacs started a transition and I scheduled binNMUs for votca-csg. >

Bug#943051: closed by Nicholas Breen (Re: [Debichem-devel] Bug#943051: gromacs: Python2 removal in sid/bullseye)

On Tue, Oct 22, 2019 at 11:06:01PM -0400, Sandro Tosi wrote: > Hello Nicholas, > any specific reason to wait this long? it would be very helpful if > there's a chance for you to speed up the upload to unstable, so that > we can reduce the number of packages needing python2 in unstable soon, > and

Bug#934662: grace: Font mapping breaks with base35 *.t1 fonts

have a partial fix so far. I'll poke at it further as time permits over the next few days, and switch to your update-grace-fonts patch if it seems intractable. Thanks! -- Nicholas Breen nbr...@debian.org

Bug#921784: [Debichem-devel] Bug#921784: gromacs: FTBFS (ld returned 1 exit status)

message appears as normal, passed through mpicxx.openmpi. Might be something specific to 100% disk usage, I'll experiment further. -- Nicholas Breen nbr...@debian.org

Bug#921784: [Debichem-devel] Bug#921784: gromacs: FTBFS (ld returned 1 exit status)

ng more difficult! If those constraints can't be met and pbuilder is essential, it should be built with 'nocheck'. Since it's no problem for either the buildds or users in their own shell, I haven't considered those issues as serious bugs. -- Nicholas Breen nbr...@debian.org

Bug#921202: ITP: votca-xtp -- Exciton transport simulation for VOTCA

Package: wnpp Severity: wishlist Owner: Debichem Team * Package name: votca-xtp Version : 1.5.0 Upstream Author : Christoph Junghans and others * URL : http://www.votca.org/ * License : Apache 2.0 Programming Lang: C++ Description : Exciton transport

Bug#914379: nmu: mpich_3.3~rc1-2

s mips64el ppc64el s390x . unstable . -m 'mpich (>= 3.3~rc1-2+b1)' Thank you. -- Nicholas Breen nbr...@debian.org

Bug#910901: plasma-applet-redshift-control: Mouse wheel only reduces color temperature, in either direction

Package: plasma-applet-redshift-control Version: 1.0.18-2 Severity: normal Tags: patch Since redshift 1.12, the interface for one-shot changes was modified, causing all mouse wheel operations to only lower the color temperature and gamma. The fix is simply to add the new "-P" command line

Bug#866440: NMU for mcomix RC bug

Hi Krzysztof and Emfox, #866440 has been an RC bug on mcomix for some months, and it is no longer installable in unstable; I've uploaded a NMU to DELAYED/5 with the attached patch. Please let me know if you'd like me to cancel that upload. -- Nicholas Breen nbr...@debian.org diff -Nru mcomix

Bug#887909: xmgrace GUI does not close properly (using kde plasma)

so disabling the compositor would be a logical thing to test. -- Nicholas Breen nbr...@debian.org

Bug#887909: xmgrace GUI does not close properly (using kde plasma)

indow is somehow hidden, grace may seem to be frozen, but it's just waiting for user input. -- Nicholas Breen nbr...@debian.org

Bug#887340: [Debichem-devel] Bug#887340: gromacs: FTBFS on x32: tests 2 and 13 time out

On Thu, Jan 18, 2018 at 05:21:48PM -0500, Aaron M. Ucko wrote: > Mark Abraham writes: > > > GROMACS dev here - I expect that will let that test pass. It just needs > > enough processes that can resolve MPI calls without deadlocking. > > Confirmed, setting

Bug#887340: [Debichem-devel] Bug#887340: gromacs: FTBFS on x32: tests 2 and 13 time out

On Wed, Jan 17, 2018 at 11:22:27PM -0500, Aaron M. Ucko wrote: > The only 3.0.x version available for x32 is 3.0.0-1, because newer > versions build-depend on pmix, which in turn build-depends on pandoc, > which is unavailable there. (I think the Haskell stack generally is.) > With that version

Bug#887340: [Debichem-devel] Bug#887340: gromacs: FTBFS on x32: tests 2 and 13 time out

ion). I don't have an x32 system available for testing, but it would be very interesting to know if the tests pass with the 3.0.x version of OpenMPI out of experimental. -- Nicholas Breen nbr...@debian.org

Bug#863872: grace: useless dependency on gconf2

libapparmor1 - none of which mandate the use of their corresponding systems. -- Nicholas Breen nbr...@debian.org

Bug#863872: grace: useless dependency on gconf2

oad anything before the stretch release in a few weeks. It's not possible to get such a change accepted into stretch before then. [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=395079#42 -- Nicholas Breen nbr...@debian.org

Bug#857713: ITP: librandom123 -- parallel random numbers library

emove the embedded code copy from gromacs. I have no strong VCS location preference; right now I don't have commit access to Med, but I'm sure that's not hard to solve. -- Nicholas Breen nbr...@debian.org

Bug#854806: hddtemp daemon won't start on a systemd system

Hi Jonathan, I'm not the hddtemp maintainer, but: in your defaults file, RUN_SYSLOG needs to be set to a non-zero value, as per the comment above that line. -- Nicholas Breen nbr...@debian.org

Bug#838591: [Debichem-devel] Processed: Re: Bug#838591: gcc-6: GROMACS compiled with gcc 6.2.0-4 fails the tests

ges depending on it have encountered various test failures, often architecture-specific. -- Nicholas Breen nbr...@debian.org

Bug#834991: [Debichem-devel] Bug#834991: gromacs: please disable SIMD on armhf

On Sun, Aug 21, 2016 at 01:19:18PM +0200, Graham Inggs wrote: > Hi Maintainer > > Gromacs FTBFS on the Ubuntu armhf buildds. The Ubuntu armhf buildds > have NEON extensions, while the ones in Debian do not. Please > consider including my patch below which simply disables SIMD on armhf, >

Bug#835113: RM: gromacs, votca-csg [armel] -- RoM; FTBFS; lack of C++11 atomics

are maintained by the Debichem team. Binary packages are as follows: gromacs gromacs-dev gromacs-mpich gromacs-openmpi libgromacs1 libgromacs-dev libvotca-csg3 libvotca-csg-dev votca-csg Thank you. -- Nicholas Breen nbr...@debian.org [1] https://lists.debian.org/debian-arm/2016/07/msg00079

Bug#834786: [Debichem-devel] Bug#834786: gromacs: FTBFS on hurd-i386 and m68k: test suite errors

t's directly caused by a packaging bug (one of the sub-builds doesn't obey DEB_BUILD_OPTIONS=nocheck, which is set by default on m68k), and I'll fix that, but I'd be happier if it *could* pass all the tests -- Nicholas Breen nbr...@debian.org

Bug#821734: libvotca-csg3: fails to upgrade from 'jessie' - trying to overwrite /usr/share/man/man7/votca-csg.7.gz

Unless someone else is already on it, I'll take care of this within the week, and that'll handle the necessary rebuild for the libgromacs1 -> libgromacs2 SONAME bump at the same time. -- Nicholas Breen nbr...@debian.org

Bug#831406: yorick FTBFS - linked to mpich

block 831406 by 831442 thanks The same bug is hitting one of my packages, seems to be an issue with mpich. Filed as https://bugs.debian.org/831442 . -- Nicholas Breen nbr...@debian.org

Bug#831442: mpich: Broken /usr/lib/libmpich.so.12 symlink, depending on installation order

ble for a FTBFS bug on yorick [1] and a whole bunch of build failures on gromacs in experimental [2]. I don't know why it's suddenly a problem now, but the buildds now seem to be installing the packages in the order that triggers this problem more often than not. -- Nicholas Breen nbr...@debian.

Bug#815678: gromacs: FTBFS with doxygen 1.8.11

5.1.1 and the as-yet-unpackaged 5.1.2. -- Nicholas Breen nbr...@debian.org

Bug#807432: RFS: python-jellyfish/0.5.1-1 [ITP]

ailed with: exit code=5: cd /tmp/buildd/python-jellyfish-0.5.1/.pybuild/pythonX.Y_2.7/build; python2.7 -m pytest [...] -- Nicholas Breen nbr...@debian.org

Bug#775719: beets: Please package newer upstream 1.3.15

patches applied in 1.3.8+dfsg-2, and it does solve bugs #792060 (RC), #757516, and I think #785903 (not checked in detail). There is a new test failure in test_nonexistent_file, unfortunately. -- Nicholas Breen nbr...@debian.org [1] https://pypi.python.org/pypi/jellyfish

Bug#797744: [Debichem-devel] Bug#797744: gromacs: shared library in a package that is not renamed with its SONAME

ternal to a particular package" wording, making it exempt from section 8. I'll see if I can split it for 5.1, but it'll be at least three weeks until I can get to working on that. On the plus side, maybe the C++ transitions will have settled down a little by then. -- Nicholas Breen nbr...@debian.org

Bug#797743: [Debichem-devel] Bug#797743: gromacs: ABI transition needed for libstdc++ v5

> so it seems very likely that a transition is needed. Isn't this just #791061 again? To the best of my knowledge, nothing external uses those. -- Nicholas Breen nbr...@debian.org

Bug#775749: fails to load comments

On Sun, Feb 15, 2015 at 12:21:13PM +0200, Evgeny Stambulchik wrote: FYI, 5.1.25 was released tonight with a fix. Sorry about a slow response. Thanks very much! Lu - I'll upload a new Debian package shortly, but it won't make it into testing or the next stable release, due to the freeze.

Bug#775749: fails to load comments

can't find an bug report in the Grace forums[1] corresponding to that change, so I don't know why it was made. Evgeny, could you please help me out with the background behind that change? Thanks! -- Nicholas Breen nbr...@debian.org [1] http://plasma-gate.weizmann.ac.il/Grace/phpbb/viewforum.php

Bug#774558: grace: dpkg trigger cycle via gsfonts

. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#759974: [Debichem-devel] Bug#759974: votca-csg: FTBFS: Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR)

On Sat, Aug 30, 2014 at 02:57:22PM -0700, Lucas Nussbaum wrote: Source: votca-csg Version: 1.2.3-1 [snip] -- checking for module 'libgmx' -- package 'libgmx' not found -- Could NOT find GROMACS (missing: GROMACS_LIBRARY GROMACS_INCLUDE_DIR) CMake Error at src/libcsg/CMakeLists.txt:25

Bug#758237: grace contains nonfree cephes library

. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#736667: xbae: [PATCH] Enable build on newer arches with dh-autoreconf and other build fixes workarounds

-line patch completely unreviewable by eye to find the four lines that matter for the change. If there's a technical improvement that I'm missing, please let me know. Thanks for the report. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ

Bug#743359: grace: uses unsupported t1lib embedded library

be a Nice Thing, but using a convenience copy of t1lib is neither RC[3] nor an outstanding security issue. -- Nicholas Breen nbr...@debian.org [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=638760#79 [2] http://anonscm.debian.org/viewvc/collab-maint/deb-maint/grace/trunk/debian/README.source

Bug#638760: Removal of grace, pygrace and expeyes

. However, there's also no real replacement for grace itself available. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#740442: RFS: par2cmdline/0.6.5-1 [ITA] -- PAR 2.0 compatible file verification and repair tool

? That version isn't due for removal from the archive quite yet, but it will probably be in the next round [1], and the current automake version is 1.14. Might as well bring it all the way up to date if it still builds easily. (I haven't looked over the rest of the package.) -- Nicholas Breen nbr

Bug#738283: RFS: rotix/0.83-4.1 RC, NMU

On Sat, Feb 08, 2014 at 11:09:07PM +0100, Andreas Moog wrote: Package: sponsorship-requests Severity: important Dear mentors, I am looking for a sponsor for a NMU of the package rotix * Package name: rotix Version : 0.83-4.1 Section : text That package has

Bug#732400: [Debichem-devel] Bug#732400: gromacs: Illegal instruction in all programs on Intel Core 2 CPU

strictly verified!) version in the next day or two. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#730701: [Debichem-devel] Bug#730701: espresso: generation of vdW_kernel_table takes a long time without any progress

On Thu, Nov 28, 2013 at 12:31:59PM +0100, Michael Banck wrote: This data file is shipped in quantum-espresso-data, so not generating it is not an option, quantum-espresso-data is arch:all, so it seems like that *could* be an option - no need to autobuild it on every architecture, and so far as

Bug#621874: [Debichem-devel] VOTCA available on my PPA

in debian/rules for them. Policy 3.9.5 was just released [2], so you can bump the Standards-Version lines in debian/control. I don't see any changes that would affect your packaging. -- Nicholas Breen nbr...@debian.org [1] https://wiki.debian.org/Projects/DebSrc3.0

Bug#725226: nmu: gromacs_4.5.3-4

it (no such problems on any previous autobuilt binary, this is the first one in some time where amd64 was the maintainer build). A proper long-term fix is planned for the next upstream release. nmu gromacs_4.6.3-4 . amd64 . -m Recompile without AVX extensions Thanks very much. -- Nicholas Breen nbr

Bug#725013: [Support] [Debichem-devel] Bug#725013: gromacs-openmpi: grompp crashes with invalid opcode

not have had. AVX extensions were only added on the Sandy Bridge and newer model Intel CPUs, and the Xeon you provided the information for doesn't have it. If that's the case, I will ask for the package to be rebuilt on a different machine where that problem won't occur. -- Nicholas Breen nbr

Bug#725013: [Debichem-devel] Bug#725013: gromacs-openmpi: grompp crashes with invalid opcode

system runs a similar Intel CPU (i5-2x00 series). Could you please attach a file that it crashes on (or a pdb2gmx/genbox/etc. sequence that creates one) and the exact command line that causes it to fail? -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ

Bug#724864: libmpich-dev: mpicc.mpich unconditionally sets RPATH

Package: libmpich-dev Version: 3.0.4-3 Severity: normal mpicc.mpich sets RPATH in all binaries it compiles. % mpicc.mpich test.c -o test % objdump -p test | grep RPATH RPATH/usr/lib/x86_64-linux-gnu This seems to be new behavior in v3; building mpich with the configuration

Bug#724866: virtual-package-depends-without-real-package-depends: libmpich-dev no longer virtual

Package: lintian Version: 2.5.19 Severity: minor Tags: patch libmpich-dev is a real package now, no longer a virtual package, causing false positives on packages that have shifted their build-dep to it (from the former libmpich2-dev). Trivial patch attached. -- Nicholas Breen nbr

Bug#721582: transition: xbae

On Thu, Sep 05, 2013 at 11:42:55PM +0200, Julien Cristau wrote: On Sun, Sep 1, 2013 at 20:16:20 -0700, Nicholas Breen wrote: I'd like to launch a very small transition for an ABI bump in src:xbae, which does have a renamed package (libxbae4 - libxbae4m). This is a sub-dependency

Bug#721582: transition: xbae

, #708462. It should affect only three leaf packages: * paw and geant321 will need binNMUs * grace will recieve a sourceful upload at the same time as xbae (#717644) All those packages have already been tested with the rebuilt xbae from experimental, and no problems were seen. -- Nicholas Breen

Bug#717640: [paw] please transition from lesstif2 to motif

also maintain grace. Please let me know when you're ready to upload to unstable, and I'll upload xbae accordingly. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Bug#717763: beets: needs to Depend on python-musicbrainzngs (= 0.4)

to the existing Depends: on python-musicbrainzngs should clear that up for any other prospective backporters. Thanks very much. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Bug#366193: Motif transition

tags 366193 -wontfix +pending severity 366193 normal user openmo...@packages.debian.org usertags lesstif2motif thanks Now that Openmotif is under a free license, this request is back on the agenda. Transition bug: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=708462 -- Nicholas Breen nbr

Bug#714753: [Debichem-devel] Bug#714753: [gromacs] build-depends on lesstif2-dev but does not build with lesstif2

hadn't noticed had been removed upstream. I'll fix that in the next upload; there's an upcoming upstream release already overdue that I'd like to wait for a little longer (days, not months). -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ

Bug#621874: votca: ITP - RFP

to it. I would certainly be happy to assist and co-maintain the package with a more directly motivated user, and could sponsor uploads for a non-DD. Maintaining it as part of the debichem team would assist in that regard. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs

Bug#690858: grace: source-hardening.diff breaks SVG output formatting

On Thu, Oct 18, 2012 at 05:19:37PM +0100, Alex Valavanis wrote: Package: Grace Version: 1:5.1.22-13 Hi Nicholas, The recent source-hardening.diff patch appears to break SVG output formatting. Please see the original bug report in Ubuntu [1]. Hello Alex, I'm on vacation this week and

Bug#580828: ghemical: Segmentation fault on running MOPAC energy calculation

On Fri, Oct 05, 2012 at 12:55:04AM +0200, Michael Banck wrote: On Sat, May 15, 2010 at 09:27:34PM -0400, Bill Gunn wrote: It crashes with any molecular geometry I have tried either imported or drawn in ghemical. I attach two example files I have tested. I can reproduce this, albeit only

Bug#689532: grace: please consider packaging new upstream version 5.1.23

On Wed, Oct 03, 2012 at 07:12:49PM +0200, Francesco Poli (wintermute) wrote: Hello, it seems that a new upstream version has recently been released: ftp://plasma-gate.weizmann.ac.il/pub/grace/src/grace5/grace-5.1.23.tar.gz Please consider packaging it, at least for experimental (if you do

Bug#680825: [Debichem-devel] Bug#680825: gromacs: FTBFS: mv: cannot stat `/«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so': No such file or directory

On Wed, Jul 11, 2012 at 03:44:22PM -0400, Brad King wrote: This should fix it: http://cmake.org/gitweb?p=cmake.git;a=commitdiff;h=8720aa04 Ideally we should add a test for this case but I have no time now. We'll include the fix in the next 2.8.9 rc. Thank you very much for tracking down

Bug#680825: [Debichem-devel] Bug#680825: gromacs: FTBFS: mv: cannot stat `/«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so': No such file or directory

On Tue, Jul 10, 2012 at 02:11:46PM +0200, Evgeni Golov wrote: Hi, the attached patch solves the issue. Not tagging patch or intend to NMU however, as I think it should be further investigated why it fails (it does not build the libs anymore when building mdrun target only). Thanks. I

Bug#678705: RFS: e2defrag/0.80 ITP: #678598

On Sun, Jun 24, 2012 at 02:31:23PM -0400, Phillip Susi wrote: On 06/24/2012 12:00 PM, Roger Leigh wrote: This was always a tool which needed to be used with great caution, and was removed for good reason. Is this safe to use with all ext2, ext3 and ext4 filesystems? Obviously there may

Bug#673319: RM: checkmp3 -- ROM; dead upstream, outdated, better alternatives in archive

buggy checks in the code. Better options in the archive include mp3check and mp3diags. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#670613: Grace should recommend xfont packages

On Fri, Apr 27, 2012 at 12:24:23PM +0100, Alex Valavanis wrote: Hi Nicholas, I guess this is an Ubuntu-specific issue then... As of xorg_1:7.6+7ubuntu1, the xfonts-100dpi and xfonts-75dpi packages were dropped from Depends to Suggests,[1] and therefore they do not appear in a standard

Bug#673352: lintian: false positive for icon-size-and-directory-name-mismatch on symlinks

image data, 32 x 32, 8-bit/color RGBA, non-interlaced -- Nicholas Breen nbr...@debian.org -- System Information: Debian Release: wheezy/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-2-amd64 (SMP w/4 CPU cores

Bug#670613: Grace should recommend xfont packages

On Fri, Apr 27, 2012 at 11:32:46AM +0100, Alex Valavanis wrote: Grace should recommend the xfonts-100dpi or xfonts-75dpi packages. I am not convinced this is a useful fix. The xorg metapackage already Depends on these packages, and a desktop system without them *and* without a remote font

Bug#571449: Build-dependency on old MPI implementations - intention to NMU

This bug has been open without activity for a little over two years now, and is one of the blockers on the mpi-defaults transition (#573187); I'll upload a NMU to DELAYED-5 in the next day or two, using the patch in my previous mail, unless there are any objections. -- Nicholas Breen nbr

Bug#662358: grace: Please Build-Depends on libpng-dev, change from libpng12-dev

. -- Nicholas Breen nbr...@debian.org -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#662358: grace: Please Build-Depends on libpng-dev, change from libpng12-dev

On Mon, Mar 05, 2012 at 03:07:46PM +0900, Nobuhiro Iwamatsu wrote: 2012/3/5 Nicholas Breen nbr...@debian.org: On Mon, Mar 05, 2012 at 01:00:43PM +0900, Nobuhiro Iwamatsu wrote: Libpng maintainers plan transition of libpng[0]. Version 1.2 is used for libpng of current debian, but will shifts

Bug#656175: keepass2: Fails to launch under mono 2.10

Package: keepass2 Version: 2.18+dfsg-1 Severity: important % keepass2 Unhandled Exception: System.TypeLoadException: Could not load type 'KeePass.Program' from assembly 'KeePass, Version=2.1.8.27472, Culture=neutral, PublicKeyToken=0738eb9f132ed756'. [ERROR] FATAL UNHANDLED EXCEPTION:

Bug#644397: [Debichem-devel] Bug#644397: Bug#644397: gromacs: pdb2gmx, version 4.5.5, fails with 'Illegal instruction' on i686, 3.0.0.1-686-pae (testing)

Using the binaries with debugging symbols that you built, could you please collect a backtrace using gdb when the program crashes? It may help to install the libc6-dbg package for additional symbols within libc, which will probably be *somewhere* in the stack.

Bug#646417: debian-science: Please update MPI implementations in distributedcomputing task

the distributedcomputing task to reflect these new binary packages. Thanks, -- Nicholas Breen nbr...@ofb.net -- System Information: Debian Release: wheezy/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 3.0.0-2-amd64 (SMP w

Bug#646418: gpivtools: Please update Depends: on MPI Python packages

in the future. Thanks, -- Nicholas Breen nbr...@ofb.net -- System Information: Debian Release: wheezy/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 3.0.0-2-amd64 (SMP w/4 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE

Bug#644397: [Debichem-devel] Bug#644397: Bug#644397: gromacs: pdb2gmx, version 4.5.5, fails with 'Illegal instruction' on i686, 3.0.0.1-686-pae (testing)

installation is probably using 1.4.3), and pdb2gmx doesn't use MPI anyhow. Best, -- Nicholas Breen nbr...@ofb.net -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#638760: grace: please remove t1lib dependency

welcome. That alone doesn't leave me much to go on -- Nicholas Breen nbr...@ofb.net -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#626336: blacs-mpi: Please add support for MPICH2 (libmpich2-dev) builds

Patch to add support for mpich2 attached. I'd be happy to NMU it if you'd prefer. Thanks, -- Nicholas Breen nbr...@ofb.net blacs-mpi.626336.patch.gz Description: Binary data

Bug#636970: grace: FTBFS with libpng 1.5

that revise this problem. Could you check and apply this patch? I'm traveling right now, but can test and upload a new version in about a week, and also forward the patch upstream. Will that fit the transition schedule? -- Nicholas Breen nbr...@ofb.net -- To UNSUBSCRIBE, email to debian-bugs

Bug#631353: developers-reference: Section 5.6.2: delayed queue goes to 15-day, not 8

is indirectly linked by way of the deferred queue overview, does describe the full range. -- Nicholas Breen nbr...@ofb.net -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#626429: updating mpi-defaults (decommissioning lam)

Subject: libmpich2-dev: please add links for /usr/lib/mpich2/{include,lib} Package: libmpich2-dev Severity: normal Tags: patch User: debian-scie...@lists.debian.org Usertags: old-mpi-eol On Wed, May 11, 2011 at 07:37:44AM +0200, Lucas Nussbaum wrote: On 10/05/11 at 20:16 -0700, Nicholas Breen

Bug#626330: pgapack: Please add support for MPICH2 to rules

where OpenMPI is not available, at which point this would become a release-critical FTBFS bug. The attached patch should allow MPICH2 compilation. -- Nicholas Breen nbr...@ofb.net --- rules.orig 2011-05-10 16:34:09.688427102 -0700 +++ rules 2011-05-10 16:34:13.244438487 -0700 @@ -35,18

Bug#626330: pgapack: Please add support for MPICH2 to rules

On 05/10/2011 05:23 PM, Dirk Eddelbuettel wrote: Hi Nicholas, On 10 May 2011 at 16:37, Nicholas Breen wrote: | Package: pgapack | Severity: normal | Tags: patch | User: debian-scie...@lists.debian.org | Usertags: old-mpi-eol | | | pgapack's debian/rules currently fails if the only installed

Bug#571446: Patch to switch from mpich1 to mpi-default-dev

enumerates properly. -- Nicholas Breen nbr...@ofb.net diff -Nru fftw-2.1.3_orig/debian/control fftw-2.1.3/debian/control --- fftw-2.1.3_orig/debian/control 2011-05-10 19:17:57.0 -0700 +++ fftw-2.1.3/debian/control 2011-05-10 19:18:54.312346690 -0700 @@ -2,7 +2,7 @@ Section: oldlibs

  1   2   >