Hello,
Thank you for the report. I will have a look at whether or not I can reproduce
this,
and will fix accordingly.
Kind regards,
Shayan
--
Shayan Doust - 201427418
Fingerprint: 0401 A810 A6F2 4303 1EA3 9759 6D7D 4419 19D0 2395
Note: all emails sent by me are signed with my PGP key
Control: owner -1 Shayan Doust
--
Shayan Doust - 201427418
Fingerprint: 0401 A810 A6F2 4303 1EA3 9759 6D7D 4419 19D0 2395
Note: all emails sent by me are signed with my PGP key.
signature.asc
Description: PGP signature
Hello,
I will be packaging send-transform soon and this is a dependency.
Any progress with this? If not, I'll package node-destroy.
Kind regards,
Shayan Doust
On Wed, 20 Jun 2018 16:33:13 -0400 Zebulon McCorkle wrote:
> Package: wnpp
> Severity: wishlist
> Owner: Zebulon
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: he...@shayandoust.me
Subject: ITP: r-cran-xmlr -- Read, Write and Work with 'XML' Data
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-xmlr
Version : 0.1.2
Upstream Author : Per Nyfelt,
* URL
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: he...@shayandoust.me
Subject: ITP: python-flask-talisman -- HTTP security headers for Flask
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: python-flask-talisman
Version : 0.7.0
Upstream Author : Google Inc
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: he...@shayandoust.me
Subject: ITP: r-cran-performanceanalytics -- GNU R Econometric Tools for
Performance and Risk Analysis
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-performanceanalytics
Version
y odd, and I'm not
sure what is broken on my system.
Kind regards.
On Mon, Mar 29, 2021 at 09:28:32AM +0900, Norbert Preining wrote:
> On Sun, 28 Mar 2021, Shayan Doust wrote:
> > Running "dpkg-reconfigure libpaper1" again, and then trying again for
> > texlive-base, spits out t
nguage: texlive-base not installed and configured, doing nothing!
> > texlive-base is not ready, skipping fmtutil --all call
> > Errors were encountered while processing:
> > texlive-base
> > E: Sub-process /usr/bin/dpkg returned an error code (1)
> >
> What is the content of /etc/papersize? Does running "dpkg-reconfigure
> libpaper1" and then try again solve your issue?
>
> Hilmar
> --
> sigfault
>
>
--
Shayan Doust - 201427418
Fingerprint: 0401 A810 A6F2 4303 1EA3 9759 6D7D 4419 19D0 2395
Note: all emails sent by me are signed with my PGP key.
signature.asc
Description: PGP signature
Package: texlive-base
Version: 2020.20210202-3
Severity: normal
X-Debbugs-Cc: he...@shayandoust.me
Dear Maintainer,
All tex packages were working fine for me until a couple of days ago,
when I did an apt update. I realised that texlive-base could not
configure itself. Unfortunately, no logs on
Hello,
I've finally had the chance to look at this, and I have also not been able to
reproduce this issue using sbuild.
Kind regards,
Shayan Doust
On Fri, 22 Jan 2021 08:29:25 +0100 Andreas Tille wrote:
> Control: severity -1 important
>
> On Thu, Jan 21, 2021 at 10:49:20PM +0100
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-bma -- Bayesian Model Averaging
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-bma
Version : 3.18.14
Upstream Author : Adrian Raftery ,
* URL : https://cran.r-project.org/package=BMA
Hello Andreas,
As of now, there still stands a single dependency called [node-http-proxy].
Unfortunately, it looks like it relies on socket.io, which has not been packaged
yet.
Kind regards,
Shayan Doust
[node-http-proxy]: https://salsa.debian.org/js-team/node-http-proxy
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-bios2cor -- GNU R from Biological Sequences and
Simulations to Correlation
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-bios2cor
Version : 2.2
Upstream Author : Bruck Taddese,
* URL
is not yet packaged. However, panel relies on Bokeh, where if I remember
correctly is currently a mess[2] and doesn't seem like any progress has been
made. So, I am not too sure what to do here.
Kind regards,
Shayan Doust
[panel]: https://pypi.org/project/panel/
[2]: https://bugs.debian.org/cgi-bin
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-circular -- GNU R Circular Statistics
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-circular
Version : 0.4
Upstream Author : Ulric Lund ,
* URL : https://cran.r-project.org/package
Hello Helmut,
Acknowledged. Thank you for this.
Kind regards,
Shayan Doust
On Thu, 24 Sep 2020 06:15:21 +0200 Helmut Grohne wrote:
> Source: covtobed
> Version: 1.1.2+dfsg-2
> Tags: patch
> User: debian-cr...@lists.debian.org
> Usertags: ftcbfs
>
> covtobed fails to cr
) (@test_prophet.R#9)
2. Error: (unknown) (@test_stan_functions.R#9)
There exists some failed tests, however 160 pass!
Kind regards,
Shayan Doust
[commit]:
https://salsa.debian.org/r-pkg-team/r-cran-rstan/-/commit/7351289242ba080c112b1c15784e57f154a79076
0x6D7D441919D02395.asc
Description: application/pgp
R/plugin.R:rstan_StanServices <- system.file("lib", .Platform$r_arch,
"libStanServices.a",
I believe the first line (regarding RcppParallel_pkg_libs) is of concern and the
cause as again, the library location assumption is wrong.
I will write a patch for this too, and
almost all of my 4
GB of RAM on my test server and it resorted to using most of my swap space, so I
am unable to test for any other issues. I've left this bug open.
Kind regards,
Shayan Doust
[commit]:
https://salsa.debian.org/r-pkg-team/r-cran-rcppparallel/-/commit/e8fcee92d68a420ca1441479661d74
, this
assumption for library location is plain wrong.
Kind regards,
Shayan Doust
[hooks.R]:
https://github.com/RcppCore/RcppParallel/blob/b216ba27dcbd3c523932bd918b6dd0b1b08d3566/R/hooks.R#L8
[build.R]:
https://github.com/RcppCore/RcppParallel/blob/b216ba27dcbd3c523932bd918b6dd0b1b08d3566/R
Package: wnpp
Severity: wishlist
Subject: ITP: argh -- C++ header-only command line processing library
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: argh
Version : 1.3.1+ds
Upstream Author : Adi Shavit
* URL : https://github.com/adishavit/argh
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-textdata -- GNU R Download and Load Various Text Datasets
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-textdata
Version : 0.4.1
Upstream Author : Emil Hvitfeldt ,
* URL : https
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-poissonbinomial -- GNU R Efficient Computation of Ordinary
and Generalized Poisson
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-poissonbinomial
Version : 1.1.2
Upstream Author : Copyright
Package: wnpp
Severity: wishlist
Subject: ITP: shasta -- nanopore whole genome assembly (binaries and scripts)
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: shasta
Version : 0.5.1
Upstream Author : Chan Zuckerberg Initiative
* URL : https
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-cmstatr -- GNU R Statistical Methods for Composite
Material Data
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-cmstatr
Version : 0.7.0
Upstream Author : Stefan Kloppenborg ,
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: damapper -- long read to reference genome mapping tool
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: damapper
Version : 0.0+git20200322.b2c9d7f
Upstream Author : Dr. Eugene W. Myers
* URL : https
(4.2.0)? Some new features, such as live browser
reload and inline SVGs would come really handy.
Kind regards,
Shayan Doust
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-ksamples -- GNU R K-Sample Rank Tests and their
Combinations
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-ksamples
Version : 1.2
Upstream Author : Fritz Scholz
* URL : https
Package: wnpp
Severity: wishlist
Subject: ITP: fast5-research -- command line executable tools for
python3-fast5-research
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: fast5-research
Version : 1.2.21
Upstream Author : Oxford Nanopore Technologies Ltd
Hello,
Any rough timeframe as to when this FTBFS is fixed?
Kind regards,
Shayan Doust
0x6D7D441919D02395.asc
Description: application/pgp-keys
signature.asc
Description: OpenPGP digital signature
Package: wnpp
Severity: wishlist
Subject: ITP: google-auth-oauthlib -- oauthlib integration with google-auth
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: google-auth-oauthlib
Version : 0.4.1
Upstream Author : , 2016, 2017, 2019 Google Inc.
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-suppdists -- GNU R Supplementary Distributions
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-suppdists
Version : 1.1
Upstream Author : Bob Wheeler,
* URL : https://cran.r-project.org
Package: wnpp
Severity: wishlist
Subject: ITP: relacy -- meticulous synchronization algorithm verifier for
relaxed memory models
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: relacy
Version : 0.0+git20191025.acc09bb
Upstream Author : Dmitry S. Vyukov
Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-dslabs -- Data Science Labs
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: r-cran-dslabs
Version : 0.7.3
Upstream Author : Rafael A. Irizarry
* URL : https://cran.r-project.org/package
Package: wnpp
Severity: wishlist
Subject: ITP: graphbin -- refined binning of metagenomic contigs using assembly
graphs
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: graphbin
Version : 1.1
Upstream Author : Graphbin Project
* URL : https
Package: wnpp
Severity: wishlist
Subject: ITP: tao-config -- C++ header-only library that reads config files and
produces a JSON value
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: tao-config
Version : 0.0+git20200604.84a7383
Upstream Author : Dr. Colin
Package: wnpp
Severity: wishlist
Subject: ITP: gneiss -- data analysis and visualisation toolbox for high
dimensional proportions
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: gneiss
Version : 0.4.6
Upstream Author : gneiss development team
* URL
Hello Diane et. al.,
I am packaging gneiss[1], where one of its dependency is Bokeh. What is
the progress of Bokeh at this time? Additionally, is this a WIP?
Kind regards,
Shayan Doust
[1]: https://salsa.debian.org/med-team/gneiss
On Sat, 14 Sep 2019 00:22:04 +0200 Pierre-Elliott =?utf-8?B
Package: wnpp
Severity: wishlist
Subject: ITP: tao-json -- multifunctional and zero-dependency C++ header-only
JSON library
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: tao-json
Version : 1.0.0~beta.11
Upstream Author : Dr. Colin Hirsch
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: mecat2 -- ultra-fast and accurate de novo assembly tools for SMRT
reads
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: mecat2
Version : 0.0+git20200428.f54c542
Upstream Author : Chuan-Le Xiao
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: dextractor -- (d)extractor and compression command library
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: dextractor
Version : 1.0
Upstream Author : Dr. Eugene W. Myers (EWM)
* URL : https
Package: wnpp
Severity: wishlist
Subject: ITP: marginphase -- simultaneous haplotyping and genotyping
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: marginphase
Version : 0.0+git20181109.cdf139e
Upstream Author : Benedict Paten
* URL : https
Package: wnpp
Severity: wishlist
Subject: ITP: libpll-2 -- Phylogenetic Likelihood Library 2
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: libpll-2
Version : 0.3.2
Upstream Author : Tomas Flouri
* URL : https://github.com/xflouris/libpll-2
Package: wnpp
Severity: wishlist
Subject: ITP: intake -- lightweight package for finding and investigating data
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: intake
Version : 0.6.0
Upstream Author : Anaconda Inc., Intake contributors
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: nanofilt -- filtering and trimming of long read sequencing data
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: nanofilt
Version : 2.6.0
Upstream Author : Wouter De Coster
* URL : https://github.com
].
Kind regards,
Shayan Doust
[1]: https://downloads.haskell.org/~platform/
[2]: https://www.stackage.org/lts-16.0
-- System Information:
Debian Release: 10.4
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures
Package: wnpp
Severity: wishlist
Subject: ITP: bmtk -- development package for building, simulating and
analysing large-scale networks
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: bmtk
Version : 0.0.7
Upstream Author : Allen Institute
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: enlighten -- a console progress bar module for Python3
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: enlighten
Version : 1.5.2
Upstream Author : , Avram Lubkin
* URL : https://github.com/Rockhopper
Package: wnpp
Severity: wishlist
Subject: ITP: pll-modules -- high level modules for the low level phylogenetic
likelihood library (devel)
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: pll-modules
Version : 0.0+git20170809.d6cc565
Upstream Author : , 2016
Package: wnpp
Severity: wishlist
Subject: ITP: covtobed -- convert the coverage track from a BAM file into a BED
file
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: covtobed
Version : 1.1.2
Upstream Author : Giovanni Birolo and Andrea Telatin
* URL
Package: wnpp
Severity: wishlist
Subject: ITP: megahit -- ultra-fast and memory-efficient meta-genome assembler
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: megahit
Version : 1.2.9
Upstream Author : The University of Hong Kong & L3 Bioinformatics Lim
Hello Andreas,
Thanks for the reminder. I have not had the chance to look at this again
yet but eager enough to have made it the thing I will look at again now.
Kind regards,
Shayan Doust
bly be
big and therefore more time has to be spent re-doing any patchwork.
Kind regards,
Shayan Doust
signature.asc
Description: OpenPGP digital signature
Package: wnpp
Severity: wishlist
Subject: ITP: bcalm -- de Bruijn compaction in low memory
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: bcalm
Version : 2.2.1
Upstream Author : INRIA <https://inria.fr/>
* URL : https://github.com/GATB
a segmentation
fault because this issue is really annoying and needs rectifying.
Kind regards,
Shayan Doust
Package: wnpp
Severity: wishlist
Subject: ITP: simka -- comparative metagenomics method dedicated to NGS datasets
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: simka
Version : 1.5.1
Upstream Author : Inria
* URL : https://github.com/GATB/simka
been out for a while. Anything useful or any replies I will also CC or
forward to this mailing list.
Kind regards,
Shayan Doust
On 05/09/2019 06:27, Andreas Tille wrote:
> Hi Shayan,
>
> On Thu, Sep 05, 2019 at 01:45:36AM +0100, Shayan Doust wrote:
>> Some investigative work. I also compil
his updated with anything else that I spot or comes
to mind.
Kind regards,
Shayan Doust
On Mon, 8 Jul 2019 21:26:02 +0200 Andreas Tille wrote:
> Hi,
>
> after switching tree-puzzle debhelper level to 9 I was cheating around
> the build time test suite via
>
> override_
Package: wnpp
Severity: wishlist
Subject: ITP: fast -- framework for Heterogeneous Medical Image Computing
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: fast
Version : 3.0.0
Upstream Author : Norwegian University of Science and Technology
* URL
unit test does run
successfully. The generated binary in the bin file also seems to invoke
without a complaint.
Those are my discoveries so far with something I've never touched
before. First bug reply so I do apologise if I did violate some reply
policy.
Best Regards,
Shayan Doust
On 16/04/2019
Package: wnpp
Severity: wishlist
Subject: ITP: mmseqs2 -- ultra fast and sensitive protein search and clustering.
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: mmseqs2
Version : 9
Upstream Author : Söding Lab <https://mpibpc.mpg.de/soeding>
Package: wnpp
Severity: wishlist
Subject: ITP: mindthegap -- Performs detection and assembly of DNA insertion
variants in NGS read datasets.
Package: wnpp
Owner: Shayan Doust
Severity: wishlist
* Package name: mindthegap
Version : 2.2.0
Upstream Author : GATB
* URL
62 matches
Mail list logo
