Bug#1037221: Aw: [Emc-developers] Bug#1037221: Bug#1037221: linuxcnc: Prepared to support Bullseye version for 3-4 years?

2023-06-14 Thread Steffen Möller
> Gesendet: Samstag, 10. Juni 2023 um 18:15 Uhr > Von: "Andy Pugh" > An: "EMC developers" > Cc: 1037...@bugs.debian.org > Betreff: [Emc-developers] Bug#1037221: Bug#1037221: linuxcnc: Prepared to > support Bullseye version for 3-4 years? > > > > > On 10 Jun 2023, at 16:34, Petter

Bug#1032975: Aw: Steffen, please raise your opinion about igdiscover

2023-04-11 Thread Steffen Möller
Hi Andreas, I am afraid I cannot put the extra effort into those packages and, admittedly, the NCBI software suite is just a bit intimidating, too. Please remove those packages from testing and if nobody shows any interest in the required updates then eventually those packages should also be

Bug#1021041: Aw: Bug#1021041: ITP: parallel-hashmap --

2023-02-15 Thread Steffen Möller
Hi Andrius, Thank you tons, yes, by all means, please proceed. Best, Steffen > Gesendet: Mittwoch, 15. Februar 2023 um 08:12 Uhr > Von: "Andrius Merkys" > An: 1021...@bugs.debian.org, "Steffen Moeller" > Betreff: Bug#1021041: ITP: parallel-hashmap -- description> > > Hi Steffen, > > On Fri, 30

Bug#1014274: yosys RM of s390x should be requested, too

2022-07-17 Thread Steffen Möller
Dear all, The s390x package of yosys is no longer built, either, and should hence also be removed, see https://tracker.debian.org/pkg/yosys . Does this need a separate RM? Many thanks! Steffen

Bug#1014100: We should do an update of all qiime2 modules as soon as possible (Was: Bug#1014100: qiime: autopkgtest needs update for new version of python-decorator)

2022-06-30 Thread Steffen Möller
On 30.06.22 11:51, Andreas Tille wrote: I'd like to point out to this serious bug. Steffen, would you mind koordinating (not doing alone) an upgrade of the qiime infrastructure to make sure everything will go smoothly? I added "to be updated" tags to all the qiime2 packages on

Bug#1012789: linucnc runtime prob with tiff is because of tiff

2022-06-17 Thread Steffen Möller
The problem is with the tiff library. On https://github.com/LinuxCNC/linuxcnc/pull/1700 it is explained how to install an earlier version from snapshot.debian.org To trigger the problem independently from linuxcnc, try $ wish % package require Img

Bug#1012789: tk Img error while importing

2022-06-17 Thread Steffen Möller
The same error is triggered from within Tcl/Tk. LinuxCNC I do not think to be to blame. $ wish % package require Img couldn't load file "/usr/lib/tcltk/x86_64-linux-gnu/Img1.4.13/libtifftcl4.1.0.so": /usr/lib/tcltk/x86_64-linux-gnu/Img1.4.13/libtifftcl4.1 .0.so: undefined symbol: _TIFFsetString,

Bug#1003968: [Pkg-electronics-devel] Bug#1003968: fpga-icestorm: icetime looking in wrong directory for chipdb files

2022-01-18 Thread Steffen Möller
Uploaded. On 18.01.22 20:41, Daniel Gröber wrote: Hi Scott, Thanks, for the report. On Tue, Jan 18, 2022 at 05:50:58PM +, Scott Ashcroft via Pkg-electronics-devel wrote: icetime seems to be looking in /usr/local/share/icebox and /usr/bin/../share/icebox for chipdb files instead of

Bug#999632: r-bioc-isoformswitchanalyzer FTBFS: ERROR: dependencies ‘DRIMSeq’, ‘tximeta’ are not available

2021-11-18 Thread Steffen Möller
On 14.11.21 08:47, Andreas Tille wrote: Control: blocked -1 by 995252 Hi Steffen ERROR: dependencies ‘DRIMSeq’, ‘tximeta’ are not available for package ‘IsoformSwitchAnalyzeR’ r-bioc-tximeta is in Debian and just needs to be mentioned in Build-Depends. However, Git seems not to be up to

Bug#984243: Help: mothur: ftbfs with GCC-11

2021-10-21 Thread Steffen Möller
On 21.10.21 20:21, Étienne Mollier wrote: Hi Andreas, Andreas Tille, on 2021-10-21: In file included from addtargets2.cpp:3: myutils.h:176:1: error: reference to 'byte' is ambiguous Since C++ 2017, the std::byte type is defined: 176 | byte *ReadAllStdioFile(FILE *f, off_t ); |

Bug#969416: LinuxCNC is coming to Debian

2021-10-13 Thread Steffen Möller
Petter kindly got in touch about me supporting the LinuxCNC developers in their packaging and an eventual upload to Debian. So, it is happening and we happily close this RFP with the upload. The package will be maintained by the LinuxCNC developers as DMs with me (or Petter, I presume) sponsoring

Bug#995723: r-cran-dbscan_1.1-8+ds-1_amd64.changes REJECTED

2021-10-11 Thread Steffen Möller
Hello, I admit not to recall if I had responded, but I had "-sa"-uploaded a fixed version -2. Many thanks to you all Steffen On 11.10.21 16:47, Andreas Tille wrote: Hi Thorsten, just in case Steffen had not responded and to have a record in the ITP bug: A fixed package was uploaded to new.

Bug#989866: ITP: illustrate -- cartoonish representations of large biological molecules

2021-06-14 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : illustrate   Version : 0.0+git20200923.217db48   Upstream Author : David S Goodsell * URL : https://github.com/ccsb-scripps/Illustrate * License : Apache-2.0   Programming Lang:  Fortran  

Bug#989535: ITP: cmdock -- fit chemical compounds to proteins and nucleotides

2021-06-06 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name    : cmdock   Version : 0.1.3   Upstream Author : RiboTargets (subsequently Vernalis (R) Ltd) * URL : https://sidock.si * License : LGPL-3.0+   Programming Lang: C   Description : fit chemical

Bug#989465: ITP: pythondata-software-compiler-rt -- extends compiler_rt for Python usage

2021-06-04 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : pythondata-software-compiler-rt   Version : 2020.08   Upstream Author : Copyright: LiteX Authors * URL : https://github.com/litex-hub/pythondata-software-compiler_rt * License : MIT  

Bug#989015: ITP: catfishq -- concatenates fastq files

2021-05-23 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: catfishq Version : 1.1.3+ds Upstream Author : philres * URL : https://github.com/philres/catfishq * License : MIT Programming Lang: Python Description : concatenates fastq files

Bug#989014: vcflib: executables in scripts/* are not packaged

2021-05-23 Thread Steffen Möller
Source: libvcflib Severity: normal A reminder to self.

Bug#988822: ITP: pyensembl -- installs data from the Ensembl genome database

2021-05-19 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : pyensembl   Version : 1.9.1+ds   Upstream Author : Copyright: Alex Rubinsteyn * URL : https://github.com/openvax/pyensembl * License : Apache-2.0   Programming Lang: Python   Description

Bug#988821: ITP: python-memoized-property -- decorator to avoid redundant computation

2021-05-19 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : python-memoized-property   Version : 1.0.3   Upstream Author : Copyright: Steven Cummings * URL : https://github.com/estebistec/python-memoized-property * License : BSD-3-Clause   Programming

Bug#988806: ITP: python-serializable -- base class with serialization methods

2021-05-19 Thread Steffen Möller
Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: python-serializable -- base class with serialization methods Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : python-serializable   Version : 0.2.1   Upstream Author : . Mount

Bug#988801: ITP: python-gtfparse -- parser for gene transfer format (aka GFF2)

2021-05-19 Thread Steffen Möller
Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: python-gtfparse -- parser for gene transfer format (aka GFF2) Package: wnpp Owner:  Steffen Severity: wishlist * Package name    : python-gtfparse   Version : 1.2.1   Upstream Author : Copyright: * URL 

Bug#988723: ITP: python-datacache -- helpers for transparently downloading datasets

2021-05-18 Thread Steffen Möller
Subject: ITP: python-datacache -- Package: wnpp Owner:  Steffen Severity: wishlist * Package name    : python-datacache   Version : 0.4.7   Upstream Author : Copyright: Alex Rubinsteyn * URL : https://github.com/openvax/datacache * License : Apache-2.0   Programming

Bug#988720: ITP: python-typechecks -- express constraints on types

2021-05-18 Thread Steffen Möller
Package: wnpp Severity: wishlist * Package name    : python-typechecks   Version : 0.1.0   Upstream Author : Copyright: * URL : https://github.com/openvax/typechecks * License : Apache-2.0   Programming Lang: Python   Description : express constraints on types  

Bug#988690: ITP: xpore -- Nanopore analysis of differential RNA modifications

2021-05-17 Thread Steffen Möller
Package: wnpp Severity: wishlist * Package name    : xpore   Version : 1.0   Upstream Author : Ploy N. Pratanwanich * URL : https://github.com/GoekeLab/xpore/ * License : Expat   Programming Lang: Python   Description : Nanopore analysis of differential RNA

Bug#988183: gemma ftbfs on buster, newer version builds fine one bullseye

2021-05-07 Thread Steffen Möller
Would a regular backport be the way to go?

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2021-01-27 Thread Steffen Möller
Hi all, Am 06.11.20 um 23:20 schrieb Diane Trout: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you.

Bug#980972: xxsds-dynamic: Changelog entry missing trailer line

2021-01-26 Thread Steffen Möller
Thank you, Logan. I just fixed that and uploaded. Nothing new from upstream. Steffen

Bug#969904: ITP: libwww-curl-simple-perl -- Simpler interface to WWW::Curl

2020-09-09 Thread Steffen Möller
Hi Andreas, On 08.09.20 18:19, Andreas Tille wrote: > Debian has libwww-curl-perl. What is the difference to this "simple" > version I said it in the description: You create simple one-liners with the very popular curl library. > and do we really need this? Yes. Google points you (almost)

Bug#966452: ITP: r-bioc-biocsingular -- Singular Value Decomposition for Bioconductor Packages

2020-07-28 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : r-bioc-biocsingular  Version : 1.4.0  Upstream Author : Aaron Lun * URL : https://bioconductor.org/packages/BiocSingular/ * License : GPL-3  Programming Lang: GNU R  Description : Singular

Bug#948919: sambama FTBFS: asked htslib about missing patch

2020-07-04 Thread Steffen Möller
https://github.com/samtools/htslib/issues/1098

Bug#948919: sambamba - htslib needs patch - guix - has the answer

2020-07-04 Thread Steffen Möller
http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics/src/commit/a2a200402b91a352dbdede01eec85accb892b8e1/htslib-add-cram_to_bam.patch That patch just makes the cram_to_bam routine visible and should be adopted without danger. Steffen

Bug#961233: ITP: jsmn -- header-only JSON library

2020-05-21 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : jsmn   Version : 1.1.0   Upstream Author : Serge A. Zaitsev * URL : https://github.com/zserge/jsmn * License : MIT   Programming Lang: C   Description : header-only JSON library  

Bug#960368: kallisto_0.46.2+dfsg-1_source.changes ACCEPTED into unstable

2020-05-15 Thread Steffen Möller
I was not aware of that, admittedly, just did a routine-update. But the build is clean. Can we integrate the test in the build, then? On 15.05.20 13:53, Andreas Tille wrote: Hi Steffen, considering bug #960368 it was probably no good idea to upload. Or did you tested the upstream tests

Bug#949966: libgclib-dev: getLine ABI uses off_t and thus depends on _FILE_OFFSET_BITS

2020-01-29 Thread Steffen Möller
On 29.01.20 16:26, Helmut Grohne wrote: Hi Andreas, On Wed, Jan 29, 2020 at 04:14:26PM +0100, Andreas Tille wrote: I have implemented a solution in Git[1] but want to discuss other options here. Latest upstream version seem to need a SONAME bump anyway as far as I can see. You can just set

Bug#946959: RFS: coreboot/4.10-1 [ITP] -- Coreboot firmware utilities

2020-01-27 Thread Steffen Möller
Heya, Please contact upstream about that GPL-2 vs GPL-2+ issue. They may not be aware. Cheers, Steffen On 27.01.20 13:19, Gürkan Myczko wrote: Hi John, The package is in great shape. The only challenge to getting the package in the archive seems to be the copyright file. Coreboot's README

Bug#949730: python -> python3 done in new upload

2020-01-24 Thread Steffen Möller
A new version 5.7.3 is out, so I have addressed the "python" in the test routines and wherever I encountered them. Some tests still fail since files are written to the install folder where they are not tested. Other comparisons now fail since there is a linebreak in the help output where there

Bug#855494: Last chance to fix mgltools-pmv

2019-12-12 Thread Steffen Möller
I am too busy to chase this all up, I am afraid. On 07.12.19 09:04, Andreas Tille wrote: Hi, I just removed mgltools-pmv from debian-med metapackages to prepare its removal. I realised that autodocktools depends mgltools-pmv so this has to go as well. Since there is no sign that this 2.5

Bug#855494: Broken with different error - I'm going to ask for removal of the package soon

2019-11-08 Thread Steffen Möller
Hello, On 08.11.19 23:14, Andreas Tille wrote: On Fri, Nov 08, 2019 at 06:00:08PM +0100, Michael Crusoe wrote: I got farther, but now the "dashboard" module won't load (no traceback). The tests still fail spectacularly. This is very old and non-free code. I suggest that all mglools* and

Bug#903762: BOINC server experimental package python 2-3 transition error: Upstream is aware of it

2019-09-10 Thread Steffen Möller
Hi Andreas, thank you for the report. A "once worked" patch is part of https://github.com/BOINC/boinc/pull/3259. No exact idea what this is waiting for but I remain confident that it will eventually be accepted. Cheers, Steffen

Bug#930216: ITP: python-noise -- Perlin noise for image generation

2019-06-08 Thread Steffen Möller
On 08.06.19 15:17, Chris Lamb wrote: Steffen Moeller wrote:: Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-noise Version : 1.2.3 * URL : https://github.com/casemane/noise 404s for me. https://github.com/caseman/noise Ooops.

Bug#913369: pluto-jpl-eph: diff for NMU version 0.0~git20180228-1.1

2019-01-08 Thread Steffen Möller
Hi Adrian, On 08.01.19 13:00, Adrian Bunk wrote: Control: tags 913369 + patch Control: tags 913369 + pending I've prepared an NMU for pluto-jpl-eph (versioned as 0.0~git20180228-1.1) and uploaded it to DELAYED/15. Please feel free to tell me if I should cancel it. Thank you for your interest

Bug#907624: What ffindex do we want to package

2019-01-04 Thread Steffen Möller
Heya, I have replied, at least I had typed it :o/ So, yes, I had chosen that version of ffsort_index to get hhsuite to compile. I have no idea if there are other reverse dependencies on ffindex, my priority is on hhsuite. Cheers, Steffen On 04.01.19 18:17, Michael Crusoe wrote: I think

Bug#907624: What ffindex do we want to package

2018-12-19 Thread Steffen Möller
Hi Andreas, the reverse dependency HH-suite failed to compile with the ffindex version Debian shipped. I have no feelings about it. It should just work :)  The HH-suite is about structure prediction from sequence homology, which I found we should continue to offer in our distribution

Bug#911162: pybel : BEL vs Babel

2018-10-16 Thread Steffen Möller
I messed this one up, biblical proportions, so to say, by confusing the BEL as in "Biological Expression Language" from github repository https://github.com/pybel/pybel with the module provided by OpenBabel, which is about reformatting molecular data between different formats (and a bit more).

Bug#908150: ITP: gnucap-python -- Python bindings for the GNU circuit analysis package

2018-09-06 Thread Steffen Möller
Hi Felix, you may be interested in https://wiki.debian.org/Teams/pkg-electronics Cheers, Steffen

Bug#807553: Request for co-maintenance of alfred init script

2018-07-28 Thread Steffen Möller
Hello, I am about to upload 2018.2 of alfred. Over here I just start alfred manually after every boot. Admittedly, an init script would be nicer. I have seen the one you referenced but I do not think batman-vis etc should be started together with alfred. That should be another init script. And,

Bug#812749: Adopting magic

2018-07-27 Thread Steffen Möller
Hi Ruben, Roland, On 7/26/18 10:49 PM, Ruben Undheim wrote: > Hi Roland, > > I see you have orphaned "magic". Is it OK for you that I adopt it (in > the team Debian Science). > > I am alreadly maintaing very closely related packages (some from the > same upstream) such as qflow, qrouter,

Bug#900532: ITP: estscan -- ORF-independent detector of coding DNA sequences

2018-06-03 Thread Steffen Möller
On 6/3/18 10:01 AM, Göran Weinholt wrote: > Steffen Möller writes: > >> Hello Göran, >> >> On 6/2/18 10:54 PM, Göran Weinholt wrote: >>> Steffen Moeller writes: >>> >>>> Package: wnpp >>>> Severity: wishlist >>>>

Bug#894298: python-gffutils new version 0.9 - relevant again?

2018-04-15 Thread Steffen Möller
Hello, I thought I should work a bit on the yellow (in git but not uploaded) packages and came across python-gffutils. There is a newer version 0.9 out, so, yeah, motivating. Just when about to upload I then found https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894298 . So this is a

Bug#891852: ITP: pluto-jpl-eph -- command line handling of JPL ephemeres data

2018-03-01 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name    : pluto-jpl-eph   Upstream Author : Bill Gray * URL : https://github.com/Bill-Gray/jpl_eph * License : GPL-2   Programming Lang: C++   Description : command line handling of JPL

Bug#890233: Subject: ITP: cyvcf2 -- efficient htslib-based VCF parser

2018-02-12 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name    : cyvcf2 * URL : https://github.com/brentp/cyvcf2/releases * License : MIT   Programming Lang: Python   Description : efficient htslib-based VCF parser Packaging is

Bug#887880: Different results for g++-4/5 vs g++-6/7

2018-01-22 Thread Steffen Möller
Dear Aurelien, The package compiles just fine with the later gcc version. But - and this is a big but - about 10 to 25 percent of results produced with the newer versions give slightly different results, i.e. different enough that the difference between the g++ versions is bigger than the

Bug#848220: g++-4.9/g++-5 show floating point diff to g++-6/g++-7

2018-01-10 Thread Steffen Möller
Hello, I just introduced g++-5 as a build dependency to https://packages.qa.debian.org/b/boinc-app-eah-brp.html because of small - but very present - runtime differences. It had helped me a lot to have g++-5 in unstable so I could just go and test. You certainly have reasons to remove it,

Bug#873847: ITP: libbroad-barclay-java -- Command line argument parsing and documentation generation

2017-08-31 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name    : libbroad-barclay-java * URL : https://github.com/broadinstitute/barclay * License : BSD   Programming Lang: Java   Description : Command line argument parsing and documentation

Bug#873756: ITP: gradle-git-version-plugin -- allows gradle to find source tree version in git

2017-08-30 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name    : gradle-git-version-plugin   Version : 0.8   Upstream Author : Palantir * URL : https://github.com/palantir/gradle-git-version * License : Apache   Programming Lang: Java  

Bug#869974: FAHV VINA 64bit app is not executable on Linux

2017-08-28 Thread Steffen Möller
Dear WCG support, I was pointed to this issue by the report of Debian BOINC user on  https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=869974 and can confirm the issue for FightAids@Home. For you to cross-check: cd /var/lib/boinc-client/projects/www.worldcommunitygrid.org ldd

Bug#870912: python-rdflib: Please update python-rdflib to 4.2.2

2017-08-06 Thread Steffen Möller
Package: python-rdflib Version: 4.2.1-2 Severity: wishlist Dear Maintainer, The version 4.2.2 of rdflib is a dependency for cwltool. Please kindly help with an update. I had give it a shot myself, but it fails two tests which I could not help. Many thanks Steffen

Bug#808895: lofreq - new version 2.1.3.1 out

2017-08-03 Thread Steffen Möller
A new version 2.1.3.1 was just released https://github.com/CSB5/lofreq/blob/master/Changelog I have not seen the issue to be addressed, but maybe someone more familiar with the source tree can comment. Cheers, Steffen

Bug#867455: python3-shellescape: missing dependencies

2017-07-11 Thread Steffen Möller
Well spotted, many thanks! If it is easy for you then I happily see you uploading your fixed package to the distribution. Steffen

Bug#864355: ITP: cod-tools -- tools for manipulation of Crystallographic Information Format v1.1 and v2.0 files

2017-06-07 Thread Steffen Möller
Hi Andrius, I happily help with sponsoring. You may also consider to team up with Debian Science at some point. Best, Steffen

Bug#861600: ITP: boinc-app-eah-brp -- BOINC extension for Einstein at Home binary pulsar search

2017-05-01 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: boinc-app-eah-brp * URL : http://www.einsteinathome.org/ * License : GPL-2 Programming Lang: C++ Description : BOINC extension for Einstein at Home binary pulsar search

Bug#753763: the graphics program crashes with a segfault

2017-04-21 Thread Steffen Möller
Hi Yixuan, On Fri, 04 Jul 2014 15:18:56 -0400 =?utf-8?b?R3VvIFlpeHVhbiAo6YOt5rqi6K2eKQ==?= wrote: > Package: boinc-app-seti-graphics > Version: 7.28~svn2408-1 > Severity: important > Tags: upstream > Currently, clicking on "show graphics" in boinc manager doesn't work for >

Bug#851418: ITP: python-futures -- backport of concurrent.futures from Python 3.2 to Python 2

2017-01-14 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-futures Version : 3.0.5 * URL : https://github.com/agronholm/pythonfutures * License : BSD Programming Lang: Python Description : backport of

Bug#851401: ITP: python-cgcloud -- Image and VM management for Jenkins

2017-01-14 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-cgcloud * URL : https://github.com/BD2KGenomics/cgcloud/ * License : Apache 2.0 Programming Lang: python Description : Image and VM management for Jenkins, Spark and

Bug#851365: ITP: toil -- cross-platform workflow engine

2017-01-14 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: toil Version : 3.5.0~alpha * URL : https://github.com/BD2KGenomics/toil * License : Apache Programming Lang: Python Description : cross-platform workflow engine

Bug#851341: ITP: python-bd2k -- general utility library for bd2k python package

2017-01-13 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-bd2k * URL : https://github.com/BD2KGenomics/bd2k-python-lib * License : Apache Programming Lang: Python Description : general utility library for bd2k python

Bug#851242: ITP: python-bx -- library to manage genomic data and its aligment

2017-01-13 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-bx Version : 0.7.2 * URL : https://github.com/bxlab/bx-python * License : MIT Programming Lang: Python Description : library to manage genomic data and its

Bug#784451: Do you have resources to look after ball? [progress info]

2016-11-11 Thread Steffen Möller
Hi, well done! On 11/11/2016 13:06, Andreas Tille wrote: > Hi Danny, > > thanks again for your help. > > On Fri, Nov 11, 2016 at 12:36:49PM +0100, Danny Edel wrote: >> Control: block 784451 by 832420 >> >> that is fine with me. I'll keep the bugs in CC too. > :-) > >>> We somehow should

Bug#843902: ITP: python-myhdl -- Hardware description generating framework

2016-11-10 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-myhdl Version : 0.9 * URL : http://www.myhdl.org/ * License : LGPL Programming Lang: Python Description : Hardware description generating framework MyHDL

Bug#732069: mgltools-vision and cadd should appear in tasks page

2016-07-15 Thread Steffen Möller
Hello, I propose to have mgltools-pmv, mgltools-vision on the tasks page and also mgltools-cadd. The other parts of the mgltools are more of a collection of helping libraries that the non-developing user seems unlikely to be aware of. Cheers, Steffen

Bug#830686: [patch] python2.7: idlelib: macos _tk_type shall always be "other"

2016-07-10 Thread Steffen Möller
Package: python2.7 Version: 2.7.12-1 Severity: normal Hello, there is a corner in the idle module with a special affiliation with the MacOS, which is truly irrelevant for Debian. However, if starting the PyShell from within Python, the init routine "initializeTkVariantTests" that would be

Bug#830573: python2.7: FTBFS in autotest because of erroneously reported missing, Windows-only winreg module

2016-07-09 Thread Steffen Möller
Package: python2.7 Version: 2.7.12-1 Severity: minor Dear Maintainer, * What led up to the situation? apt-get source python2.7 cd python2.7 * What exactly did you do (or not do) that was effective (or ineffective)? dpkg-buildpackage -rfakeroot -uc -us * What was the outcome of

Bug#826615: iverilog NMU prepared

2016-07-04 Thread Steffen Möller
Hello, My team membership application pending I have prepared an NMU for iverilog 10.1. Is anything speaking against the version update? Best, Steffen

Bug#829017: ITP: python-bioblend -- CloudMan and Galaxy API library

2016-06-29 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: python-bioblend Version : 0.7.0 * URL : https://github.com/galaxyproject/bioblend * License : MIT/X Programming Lang: Python Description : CloudMan and Galaxy API

Bug#829006: ITP: wchartype -- handling of double-byte characters

2016-06-29 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: wchartype Version : 0.1 * URL : http://ginstrom.com/code/wchartype.html * License : MIT/X Programming Lang: Python Description : handling of double-byte

Bug#828974: ITP: svgwriter -- Python library for creating SVG images

2016-06-29 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: svgwriter Version : 1.1.8 * URL : https://pypi.python.org/pypi/svgwrite/ * License : MIT/X Programming Lang: Python Description : Python library for creating SVG

Bug#817385: Moving Bytecode to Debian Med (or Java) Git

2016-06-20 Thread Steffen Möller
Go ahead. This pkg-escience was that Taverna collective effort. Thanks Steffen On 20/06/16 15:38, Olivier Sallou wrote: > I made a quick fix to switch to compat 9 and fix Java version to current > jdk in sid. > > However, i cannot push to pkg-escience / bytecode (permission denied). > > It

Bug#817385: Moving Bytecode to Debian Med (or Java) Git

2016-06-20 Thread Steffen Möller
Hi Andreas, On 20/06/16 12:21, Andreas Tille wrote: > Hi, > > the RC bug #817385 affects several Debian Med packages. IMHO it would > be best if the package would be moved to either Debian Med or Debian > Jave Git. The package is currently unmaintained (Steffen, please > correct me if I'm

Bug#807553: Could you possibly provide the init scripts?

2016-05-29 Thread Steffen Möller
Hi Franz, somehow I am still shying off a bit from providing the init scripts for alfred and friends. The link you provide is stale now. If you happen to have something fancy available that with a chance is already tested then I would add it to the package. Cheers, Steffen

Bug#823650: RFS: gcc-6-doc/6.1.0-1 [ITP]

2016-05-08 Thread Steffen Möller
Uploaded. Best, Steffen On 07/05/16 04:03, Guo Yixuan (郭溢譞) wrote: > Package: sponsorship-requests > Severity: wishlist > Control: block 822667 by -1 > > Dear mentors, > > I'm looking for a sponsor for my package gcc-6-doc. (ITP: #822667) > > * Package name: gcc-6-doc > Version :

Bug#818605: ITP: dindel -- find insertions and deletions in biological sequences

2016-03-19 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: dindel * URL : https://sites.google.com/site/keesalbers/soft/dindel * License : GPL-3.0+ Description : find insertions and deletions in biological sequences The

Bug#816925: ITP: condetri -- Perl-based trimming of Illumina FASTQ files

2016-03-06 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: condetri Version : 2.3 * URL : https://github.com/linneas/condetri/ * License : to be clarified Programming Lang: Perl Description : Perl-based trimming of

Bug#813934: ITP: python-shellescape -- escapes characters to safely assemble command lines

2016-02-06 Thread Steffen Möller
Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: python-shellescape * URL : https://github.com/chrissimpkins/shellescape * License : MIT Programming Lang: Python Description : escapes characters to safely assemble command

Bug#811460: ITP: fast5 -- library for reading Oxford Nanopore Fast5 files

2016-01-25 Thread Steffen Möller
Hi, I happily help with sponsoring and any feedback on how nice the nanopore is working for you would be appreciated :) Best, Steffen On 19/01/16 09:07, Afif Elghraoui wrote: > Package: wnpp > Severity: wishlist > Owner: Debian Med Packaging Team >

Bug#807546: overriding auto clean to compile on non-linux systems

2015-12-20 Thread Steffen Möller
Hello, The AL.F.R.E.D. makefile happily tests for the missing library also for the cleaning of the source tree. And that clean is executed prior to the build. FAIL. My next update of alfred, which shall be a new upstream version, will see override_dh_auto_clean: $(MAKE) $(MAKEOPTIONS)

Bug#807555: [alfred] Don't modify upstream tarball

2015-12-10 Thread Steffen Möller
Hi Franz, On 10/12/15 11:17, Franz Schrober wrote: > Just looked at what you've modified in this "3.0 (quilt)" package and why you > had to create a new tarball (see #807555). Following was shown me when I > diffed the two tarballs: > > diff -ruN orig/alfred-2015.1/vis/debugfs.c

Bug#802255: ITP: ecdsautils -- elliptic curve cryptography command line

2015-10-18 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: "Steffen Möller" <moel...@debian.org> * Package name: ecdsautils Version : 0.3.2 Upstream Author : Nils Schneider * URL : https://github.com/tcatm/ecdsautils * License : custom MIT-like Programming Lang:

Bug#802174: ITP: batman-adv-kernelland -- source for the batman-advanced kernel module

2015-10-17 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: "Steffen Möller" <steffen_moel...@gmx.de> * Package name: batman-adv-kernelland Version : 2013.4.0 * URL : http://www.open-mesh.net/ * License : GPL Programming Lang: C Description : source for the

Bug#801466: ITP: fastd -- Fast and Secure Tunneling Daemon

2015-10-10 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: "Steffen Möller" <moeller@localhost.localdomain> * Package name: fastd Version : 17 Upstream Author : Matthias Schiffer * URL : https://projects.universe-factory.net/projects/fastd * License : custom Pro

Bug#793464: Aw: Bug#793464: astrometry-data-2mass -- Star catalogs for astrometry.net from 2MASS

2015-07-28 Thread Steffen Möller
Hi Ole, please have a look at what https://wiki.debian.org/getData can possibly do for you. An idea about how your package could possibly look like you find here http://anonscm.debian.org/viewvc/debian-med/trunk/packages/autodocksuite/trunk/debian/autodock-getdata.install?view=markup Best,

Bug#787746: Aw: Re: ball: FTBFS, depends on non existant libqt4-gui

2015-06-14 Thread Steffen Möller
I would highly appreciate if you can either allow me to push this as an NMU or just build+upload yourself. Oh, please feel free to NMU - every piece of help is much appreciated. Best, Steffen -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of

Bug#787746: Aw: Bug#787746: ball: FTBFS, depends on non existant libqt4-gui

2015-06-07 Thread Steffen Möller
On Friday 05 June 2015 16:33:45 Lisandro Damián Nicanor Pérez Meyer wrote: Mm, no, I'm afraid ball keeps FTBFS due to the same error: Linking CXX executable ../../../bin/BALLView /usr/bin/ld: CMakeFiles/BALLView.dir/main.o: undefined reference to symbol 'XInitThreads'

Bug#783864: Aw: Bug#783864: ITP: gcc-5-doc -- documentation for the GNU compilers (gcc, gobjc, g++)

2015-05-03 Thread Steffen Möller
Hi Yixuan, I'm maintaining gcc-4.(8|9)-doc now. All the packaging work is in available in git[1]. [1] http://anonscm.debian.org/gitweb/?p=users/yixuan-guest/gcc-doc.git;a=summary as always, I am around, just wait a bit if some one else surfaces as a new contact. A colleague of mine

Bug#783109: Aw: Bug#783109: ITP: orocos-kdl -- Orocos Kinematics and Dynamics Library

2015-04-22 Thread Steffen Möller
Hi Leopold, I would definitely wish to have the time to play with this. The least I can do is to help with sponsoring. Ping me. Steffen Gesendet: Mittwoch, 22. April 2015 um 12:37 Uhr Von: Leopold Palomo-Avellaneda l...@alaxarxa.net An: Debian Bug Tracking System sub...@bugs.debian.org

Bug#782736: ITP: nodogsplash -- manages public internet access

2015-04-16 Thread Steffen Möller
Package: wnpp Severity: wishlist Owner: Steffen Moeller steffen_moel...@gmx.de * Package name: nodogsplash * URL : https://github.com/smoe/nodogsplash/tree/master * License : GPL-2.0+ Description : manages public internet access

Bug#755897: Aw: Re: ITP: alfred -- Almighty Lightweight Fact Remote Exchange Daemon

2015-04-12 Thread Steffen Möller
Ciao Elena, any news on the status of this? I'm trying to use debian (instead of OpenWRT) on my ninux (italian community network) node and having alfred would be quite useful. P.S. I've noticed that somebody from FreiFunkNord already did some packaging (outside debian, it seems): do you

Bug#777002: Aw: Bug#777002: libusb-java: can't load library: wrong name

2015-02-05 Thread Steffen Möller
Ouch. Thank you for spotting this. Somewhat weird that it had escaped me. Please kindly help yourself with a symbolic link for the moment. Is there a chance that you would feel prepared to adopt the maintenance of the libusb-java package? Or join me as a co-maintainer? I am somewhat more than

Bug#771154: [Debian-med-packaging] Bug#771154: plink: New major upstream version of plink

2014-12-22 Thread Steffen Möller
Much in support of Dylan, please also think about the binary filename of the executable. We had the unfortunate p-link for Version 1 to avoid a clash with one of the putty tools. This was a mistake at the time imho. Shall we correct for that? Or is upstream already defaulting to plink2? This

Bug#772153: Aw: Bug#772153: RFS: mrtdreader/0.1.2-1 [ITP]

2014-12-08 Thread Steffen Möller
Hi Ruben, do you already have the two signature of your GPG key? You are then a prime candidate to become a Debian Maintainer ... which also helps attracting sponsors :) Ping me if there is nobody else surfacing. Best, Steffen Gesendet: Freitag, 05. Dezember 2014 um 17:16 Uhr Von: Ruben

Bug#767411: Aw: Bug#767411: torque: should not be released with jessie

2014-10-31 Thread Steffen Möller
Hello,    Von: Dominique Belhachemi domi...@debian.org I agree that the 2.4 branch is completely outdated. We should switch to a newer branch. The 2.5 and 4.1 branches are not suitable for Debian due to licensing issues. But the 4.2 branch is licensed under the same license as the 2.4 branch, so

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