Bug#1006784: automake: fixes for python3.10 distutils changes

2022-03-04 Thread Stefano Rivera
ckages may need to adjust dh_install configuration to find modules in /usr/local. With this patch, automake will install to /usr for locally built code and debian-packaged code. This probably isn't desired. Maybe check prefix and select the appropriate scheme from that? SR -- Stefano Rivera

Bug#1006615: python3-pybind11: Handle Python 3.10's default sysconfig paths

2022-03-01 Thread Stefano Rivera
Hi Debian (2022.02.28_13:58:36_-0400) > Attached are a pair of patches to address the issue. I've forwarded them > upstream in https://github.com/pybind/pybind11/pull/3764 And it has been merged, upstream. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1006615: python3-pybind11: Handle Python 3.10's default sysconfig paths

2022-02-28 Thread Stefano Rivera
45c12f23f64e9adef30d51e667f Mon Sep 17 00:00:00 2001 From: Stefano Rivera Date: Mon, 28 Feb 2022 12:49:51 -0400 Subject: [PATCH 1/2] Use sysconfig in Python >= 3.10 Rely on sysconfig for installation paths for Python >= 3.10. distutils has been deprecated and will be removed. Fixes: #

Bug#1005438: pygame: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" --system=custom --test-args "/usr/bin/xvfb-run {interpreter} -m pygame.tests.__main__ --exclude opengl"

2022-02-22 Thread Stefano Rivera
but they're getting harder and harder. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1004176: qbrz not working on Debian 11

2022-02-15 Thread Stefano Rosellini
I finally found the problem. I solved installing python3-sip! Il 23 Gennaio 2022 20:58:09 CET, Stefano Rosellini ha scritto: >Il 23/01/22 15:38, Jelmer Vernooij ha scritto: >> On Sat, Jan 22, 2022 at 09:52:04AM +0100, Stefano Rosellini wrote: >>> Package: qbzr >> Do y

Bug#1002325: [Help] Re: python-envisage: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" returned exit code 13

2022-02-14 Thread Stefano Rivera
thing with a "set -e;" for sanity. You could use a subshell in the inner-loop, to avoid having to change directory back to CURDIR again, but You could generate all the eggs and then run pybuild --test once, letting it loop over python versions, itself. SR -- Stefano Rivera http://t

Bug#837878: dh-python: support for running test suites with pytest-runner

2022-02-13 Thread Stefano Rivera
Hi Sean (2016.09.15_00:55:08_-0400) tox is a good way to test against an installed version of the module. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#943580: dh_python3 doesn't recognize typing

2022-02-13 Thread Stefano Rivera
and unnecessarily installed, or the package maintainer should patch-out the dependency. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#949285: src:dh-python: should parse DH_OPTIONS

2022-02-13 Thread Stefano Rivera
Hi Andrej (2020.01.19_06:40:37_-0400) > dh-python* does not currently parse DH_OPTIONS. It does, but was appending rather than prepending them. We can fix that. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1005257: ITP: hatchling -- Python package build backend used by Hatch

2022-02-09 Thread Stefano Rivera
Package: wnpp Severity: wishlist Owner: Stefano Rivera X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: hatchling Version : 0.11.2 Upstream Author : Ofek Lev * URL : https://ofek.dev/hatch/ * License : Expat Programming Lang: Python Description

Bug#1005211: ufolib2: Replace dh-python-pep517 with pybuild-plugin-pyproject

2022-02-08 Thread Stefano Rivera
Source: ufolib2 Version: 0.12.1+dfsg1-1 Severity: normal Tags: patch The next dh-python upload will remove support for Build-Depending on dh-python-pep517. Please replace this with pybuild-plugin-pyproject. Thanks, SR diff -Nru ufolib2-0.12.1+dfsg1/debian/control

Bug#1005210: silkaj: Replace dh-python-pep517 with pybuild-plugin-pyproject

2022-02-08 Thread Stefano Rivera
Source: silkaj Version: 0.9.0-3 Severity: normal Tags: patch The next dh-python upload will remove support for Build-Depending on dh-python-pep517. Please replace this with pybuild-plugin-pyproject. Thanks, SR diff -Nru silkaj-0.9.0/debian/control silkaj-0.9.0/debian/control ---

Bug#1005209: python-matrix-nio: Replace dh-python-pep517 with pybuild-plugin-pyproject

2022-02-08 Thread Stefano Rivera
Source: python-matrix-nio Version: 0.18.7-1 Severity: normal Tags: patch The next dh-python upload will remove support for Build-Depending on dh-python-pep517. Please replace this with pybuild-plugin-pyproject. Thanks, SR diff -Nru python-matrix-nio-0.19.0/debian/control

Bug#1005207: python-duniterpy: Replace dh-python-pep517 with pybuild-plugin-pyproject

2022-02-08 Thread Stefano Rivera
Source: python-duniterpy Version: 0.62.0-2 Severity: normal Tags: patch The next dh-python upload will remove support for Build-Depending on dh-python-pep517. Please replace this with pybuild-plugin-pyproject. Thanks, SR diff -Nru python-duniterpy-0.62.0/debian/control

Bug#1005043: lintian: check that Python version numbers are not 0.0.0

2022-02-06 Thread Stefano Rivera
p fails. So this needs to be > patched. Or export SETUPTOOLS_SCM_PRETEND_VERSION. https://github.com/pypa/setuptools_scm#environment-variables pybuild does this for you. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1004378: dh_python3: does not correctly handle some cases of os-versioned dependencies

2022-01-27 Thread Stefano Rivera
2" line to debian/py3dist-overrides or add proper dependency to > Depends by hand and ignore this info. Aha, no dependencies generated, just warnings. Right, we can do something about that. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1004350: php-common: Conflict with php7.4

2022-01-25 Thread Stefano Callegari
> > -- > Ondřej Surý (He/Him) > > > On 25. 1. 2022, at 16:51, Stefano Callegari > > wrote: > > > > Package: php-common > > Version: 2:92 > > Severity: normal > > > > Dear Maintainer, > > > > while in Sid php7.4 is stil

Bug#1004350: php-common: Conflict with php7.4

2022-01-25 Thread Stefano Callegari
php 8.1 and 7.4 is downgrade it to 2:76 from Stable. Why php7.4? Simply, some web applications like Wordpress aren't ready for php8.1. Please, is it possible to unlock php7.4 in php-common from Sid? Thanks Stefano -- System Information: Debian Release: bookworm/sid APT prefers unstable APT

Bug#1004296: smart-notifier: Provide a filter mechanism

2022-01-24 Thread Stefano Rivera
Package: smart-notifier Version: 0.28-8 Severity: normal Tags: upstream Due to #900244, smart-notifier makes a lot of noise for NVMe devices, which are the norm these days. It would be nice to be able to filter these out. If smartd doesn't have a filter, then smart-notifier should. SR --

Bug#1004176: qbrz not working on Debian 11

2022-01-23 Thread Stefano Rosellini
Il 23/01/22 15:38, Jelmer Vernooij ha scritto: On Sat, Jan 22, 2022 at 09:52:04AM +0100, Stefano Rosellini wrote: Package: qbzr Do you mean qbrz rather than qbzr? Yes. Sorry. These names are terrible... Version: 0.23.2+bzr1640-1 I installed brz 3.1.0-8, bzr 2.7.0+bzr6622+brz and qbzr 0.23.2

Bug#994888: chromium: chrome://extensions/ broken

2022-01-23 Thread Stefano Callegari
500, Andres Salomon scrisse: > > On Wed, 12 Jan 2022 16:51:02 +0100 Stefano Callegari wrote: > > > Package: chromium > > > Followup-For: Bug #994888 > > > > > > Dear Maintainer, > > > > > > the last version seems back to work all th chrom

Bug#994888: chromium: chrome://extensions/ broken

2022-01-23 Thread Stefano Callegari
Il Fri, Jan 21, 2022 at 06:19:14PM -0500, Andres Salomon scrisse: > On Wed, 12 Jan 2022 16:51:02 +0100 Stefano Callegari wrote: > > Package: chromium > > Followup-For: Bug #994888 > > > > Dear Maintainer, > > > > the last version seems back to work all th chr

Bug#1004176: qbrz not working on Debian 11

2022-01-22 Thread Stefano Rosellini
Package: qbzr Version: 0.23.2+bzr1640-1 I installed brz 3.1.0-8, bzr 2.7.0+bzr6622+brz and qbzr 0.23.2+bzr1640-1. Executing "bzr qlog" or "brz qlog" or other command with "q*" I get an unknown command. Example: $ bzr qlog brz: ERROR: unknown command "qlog". Perhaps you meant "log" $ brz qlog

Bug#1003700: python-coverage: autopkgtest fails - pypy-coverage no longer built

2022-01-13 Thread Stefano Rivera
Source: python-coverage Version: 6.2+dfsg1-1 Severity: normal Since 6.2+dfsg1-1 the autopkgtest is failing, due to the removal of pypy-coverage: https://ci.debian.net/packages/p/python-coverage/unstable/amd64/ E: Unable to locate package pypy-coverage module-scripts FAIL badpkg blame:

Bug#994888: chromium: chrome://extensions/ broken

2022-01-13 Thread Stefano Callegari
Package: chromium Followup-For: Bug #994888 Dear Maintainer, the last version seems back to work all th chrome:// listed above. But Amazon Music still to ask me to update... Thanks -- System Information: Debian Release: bookworm/sid APT prefers unstable APT policy: (903, 'unstable'),

Bug#1003573: setuptools: diff for NMU version 59.6.0-1.1

2022-01-12 Thread Stefano Rivera
:07.0 -0400 +++ setuptools-59.6.0/debian/changelog 2022-01-12 13:21:21.0 -0400 @@ -1,3 +1,10 @@ +setuptools (59.6.0-1.1) unstable; urgency=medium + + * Non-maintainer upload. + * Build a python3-setuptools-whl package. Closes: #1003573. + + -- Stefano Rivera Wed, 12 Jan 2022 13:21:21

Bug#1003618: python-setuptools: diff for NMU version 44.1.1-1.1

2022-01-12 Thread Stefano Rivera
=medium + + * Non-maintainer upload. + * Build a python2-setuptools-whl package. Closes: #1003573. + * Patch: Handle the removal of bdist_wininst from distutils. +Closes: #1002444 + + -- Stefano Rivera Wed, 12 Jan 2022 13:33:15 -0400 + python-setuptools (44.1.1-1) unstable; urgency=medium

Bug#1003573: setuptools: diff for NMU version 58.2.0-1.1

2022-01-12 Thread Stefano Rivera
/changelog 2021-10-11 07:44:59.0 -0400 +++ setuptools-58.2.0/debian/changelog 2022-01-12 13:21:21.0 -0400 @@ -1,3 +1,10 @@ +setuptools (58.2.0-1.1) unstable; urgency=medium + + * Non-maintainer upload. + * Build a python3-setuptools-whl package. Closes: #1003573. + + -- Stefano Rivera

Bug#1003573: python-pip-whl: Migrate from dirtbike back to individual wheel packages

2022-01-11 Thread Stefano Rivera
Hi 1003573 (2022.01.11_18:40:48_-0400) > Patches for setuptools and python-setuptools attached. The setuptools wheel isn't compatible with Py2, so it shoudn't be marked universal. V2 patch attached. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272 diff --git a/deb

Bug#1003578: hash-slinger: Unnecessary dependency on python3-ipaddr

2022-01-11 Thread Stefano Rivera
Package: hash-slinger Version: 3.1-1 Severity: normal Tags: patch Control: block 1003576 with -1 From what I can see, hash-slinger has an entirely unnecessary dependency on python3-ipaddr (which I want to remove from the archive, in #1003576). The ipaddr module was replaced by the ipaddress

Bug#1003576: RM: python-ipaddr -- ROM; Replaced by ipaddress in stdlib

2022-01-11 Thread Stefano Rivera
Package: ftp.debian.org Severity: normal Please remove python-ipaddr, we don't need it in the archive any more. It was replaced by the ipaddress module in the stdlib. We kept python-ipaddr around for pip on python 2.7, but now that pip 21 drops support for Python 2.7 (and has its dependencies

Bug#1003573: python-pip-whl: Migrate from dirtbike back to individual wheel packages

2022-01-11 Thread Stefano Rivera
hon2-pip-whl and python2-setuptools-whl, to be abundandly clear that they are for 2.7 and not reuse the python-pip-whl package name. Updated python-setuptools patch attached. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272 diff --git a/debian/changelog b/debian/changelog index f099

Bug#1003573: python-pip-whl: Migrate from dirtbike back to individual wheel packages

2022-01-11 Thread Stefano Rivera
Hi Debian (2022.01.11_18:25:06_-0400) Patches for setuptools and python-setuptools attached. -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272 diff --git a/debian/changelog b/debian/changelog index f099d10..4a3bd55 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9

Bug#1002444: python-setuptools: FTBFS: ModuleNotFoundError: No module named 'distutils.command.bdist_wininst'

2022-01-11 Thread Stefano Rivera
Control: forwarded -1 https://github.com/pypa/setuptools/pull/1986 Control: tag -1 + patch Patch attached. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272 From: "Jason R. Coombs" Date: Tue, 11 Jan 2022 18:04:05 -0400 Subject: Fix install_scripts() if bdi

Bug#1003573: python-pip-whl: Migrate from dirtbike back to individual wheel packages

2022-01-11 Thread Stefano Rivera
Package: python-pip-whl Version: 21.3.1+dfsg-1 Severity: normal Control: affects -1 setuptools wheel python-virtualenv python-setuptools Now that we're bundling pip's vendored dependencies again, we only need 3 wheels for virtualenv. So we can replace python-pip-whl with individual binary

Bug#995399: bluez: bluetooth disable after few seconds - ADV Monitor

2021-12-29 Thread Stefano Callegari
Package: bluez Version: 5.62-2 Followup-For: Bug #995399 Dear Maintainer, yesterday I switch to win10 (dual boot) and bluetooth works so isn't a hardware problem (good new!). Back to Debian I done new tests. Again the bluetoothd is up when I move the mouse and goes down if not, but I've

Bug#1001914: debhelper: dh_missing does not recognise pyinstall files

2021-12-25 Thread Stefano Rivera
/tmp, dh_install is probably the better tool. The only argument I can see for handling dh_missing properly with pyinstall files is so that these two tasks can go in one place. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1002620: bullseye-pu: package pypy3/7.3.5+dfsg-2+deb11u1

2021-12-25 Thread Stefano Rivera
1519) + + -- Stefano Rivera Sat, 25 Dec 2021 11:54:46 -0400 + pypy3 (7.3.5+dfsg-2) unstable; urgency=medium * Upload to unstable. diff -Nru pypy3-7.3.5+dfsg/debian/patches/import-h-endif pypy3-7.3.5+dfsg/debian/patches/import-h-endif --- pypy3-7.3.5+dfsg/debian/patches/import-h-endif 1969-12-31 2

Bug#1002615: toilet: diff for NMU version 0.3-1.4

2021-12-25 Thread Stefano Rivera
. + * Bump Standards-Version to 4.6.0, no changes needed. + * Remove ancient figlet conflicts, no longer needed. + * Add a smoketest autopkgtest. + + -- Stefano Rivera Sat, 25 Dec 2021 10:30:38 -0400 + toilet (0.3-1.3) unstable; urgency=medium * Non maintainer upload by the Reproducible

Bug#905231: dh-python: generate dependency on python{,3}-pkg-resources ?

2021-12-17 Thread Stefano Rivera
ays setuptools uses importlib.metadata in entry points (since setuptools 47.2, with Python 3.8), so maybe this is less of an issue these days? I'm leaning towards wontfix, given that. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#997361: testresources: diff for NMU version 2.0.1-2.1

2021-12-09 Thread Stefano Rivera
-08 06:08:01.0 -0400 +++ testresources-2.0.1/debian/changelog 2021-12-09 17:52:35.0 -0400 @@ -1,3 +1,10 @@ +testresources (2.0.1-2.1) unstable; urgency=medium + + * Non-maintainer upload. + * Patch: Python 3.10 support. Closes: #997361 + + -- Stefano Rivera Thu, 09 Dec 2021 17:52

Bug#1001389: bullseye-pu: package distro-info-data/0.51+deb11u1

2021-12-09 Thread Stefano Rivera
+1,11 @@ +distro-info-data (0.51+deb11u1) bullseye; urgency=medium + + * Update data to 0.52: +- Extend Ubuntu 14.04 and 16.04 ESM out to 10 years in total. +- Add Ubuntu 22.04 LTS, Jammy Jellyfish. + + -- Stefano Rivera Thu, 09 Dec 2021 09:40:48 -0400 + distro-info-data (0.51) unstable

Bug#1001388: bullseye-pu: package python-virtualenv/20.4.0+ds-2+deb11u1

2021-12-09 Thread Stefano Rivera
) + + -- Stefano Rivera Thu, 09 Dec 2021 09:34:08 -0400 + python-virtualenv (20.4.0+ds-2) unstable; urgency=medium * Patch: Fix --upgrade-embed-wheels. diff -Nru python-virtualenv-20.4.0+ds/debian/patches/include-pkg_resources.patch python-virtualenv-20.4.0+ds/debian/patches/include

Bug#1000812: [RFH] Bug#1000812: pyrle: import fails on Python 3.10

2021-12-04 Thread Stefano Rivera
Hi Nilesh (2021.12.04_15:15:05_+) > Would you have any hint on this? > Is it a bug with the python3 package itself? You're waiting for python3-tabulate to be patched for Python 3.10 support. I added a bug blocking link. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#1000774: python3-matplotlib: Segfault on mips64el in draw

2021-11-28 Thread Stefano Rivera
Package: python3-matplotlib Version: 3.5.0-2 Severity: serious Justification: FTBFS Affects: deap deap FTBFS on mips64el, in matplotlib, I'd assume this is a matploptlib regression on mips64el: Current thread 0x00fff7382010 (most recent call first): File

Bug#997719: libvirt-python: diff for NMU version 7.9.0-0.1

2021-11-24 Thread Stefano Rivera
/debian/changelog --- libvirt-python-7.0.0/debian/changelog 2021-02-18 03:45:20.0 -0400 +++ libvirt-python-7.9.0/debian/changelog 2021-11-24 20:02:38.0 -0400 @@ -1,3 +1,11 @@ +libvirt-python (7.9.0-0.1) unstable; urgency=medium + + * Non-maintainer upload. + * New upstream release +

Bug#998471: gpgme1.0: diff for NMU version 1.16.0-1.2

2021-11-23 Thread Stefano Rivera
-maintainer upload. + * Patch: Avoid a hardcoded list of known Python versions. (Closes: #998471) + + -- Stefano Rivera Tue, 23 Nov 2021 21:15:08 -0400 + gpgme1.0 (1.16.0-1.1) unstable; urgency=medium * Non-maintainer upload. diff -Nru gpgme1.0-1.16.0/debian/patches/0004-core-Fix-use-after

Bug#1000204: pyfai: diff for NMU version 0.20.0+dfsg1-4.1

2021-11-22 Thread Stefano Rivera
+ + * Non-maintainer upload. + * Patch: Python 3.10 support, thanks Lukas Märdian. (Closes: #1000204) + + -- Stefano Rivera Mon, 22 Nov 2021 21:29:59 -0400 + pyfai (0.20.0+dfsg1-4) unstable; urgency=medium * Bug fix: "Removal of the python3-*-dbg packages in sid/bookworm", diff

Bug#999519: xrayutilities: diff for NMU version 1.7.1-2.1

2021-11-22 Thread Stefano Rivera
@@ +xrayutilities (1.7.1-2.1) unstable; urgency=medium + + * Non-maintainer upload. + * Patch: matplotlib 3.5 support (Closes: #999519) + + -- Stefano Rivera Mon, 22 Nov 2021 21:22:36 -0400 + xrayutilities (1.7.1-2) unstable; urgency=medium * Corrected Profile nodocs -> nodoc diff -

Bug#1000428: gammapy: FTBFS with matplotlib 3.5

2021-11-22 Thread Stefano Rivera
Source: gammapy Version: 0.18.2-1 Severity: serious Justification: FTBFS Matplotlib 3.5 seems to have caused some test failures: === short test summary info FAILED gammapy/datasets/tests/test_map.py::test_plot_residual_onoff - ValueEr... FAILED

Bug#1000427: pyregion: FTBFS with setuptools >= 58

2021-11-22 Thread Stefano Rivera
Source: pyregion Version: 2.1.1-1 Severity: serious Tags: upstream Justification: FTBFS pyregion fails to build with setuptools >= 58, which dropped use_2to3 support.: /usr/lib/python3/dist-packages/setuptools/dist.py:294: DistDeprecationWarning: use_2to3 is ignored. warnings.warn(f"{attr} is

Bug#1000423: python-biom-format: FTBFS with Python 3.10 - Test failures

2021-11-22 Thread Stefano Rivera
Source: python-biom-format Version: 2.1.10-2 Severity: serious Tags: upstream Justification: FTBFS Block -1 with 1000422 python-biom-format FTBFS with Python 3.10: === short test summary info ERROR biom/tests/test_err.py ERROR

Bug#1000422: pandas: FTBFS with Python 3.10 - Test failures

2021-11-22 Thread Stefano Rivera
Source: pandas Version: 1.1.5+dfsg-2 Severity: serious Justification: FTBFS Pandas fails to build with Python 3.10. See: https://buildd.debian.org/status/fetch.php?pkg=pandas=amd64=1.1.5%2Bdfsg-2%2Bb1=1637461771=0 === FAILURES ===

Bug#1000419: pymatgen: FTBFS - Test failure: BSPlotterProjectedTest.test_methods

2021-11-22 Thread Stefano Rivera
Source: pymatgen Version: 2022.0.14+dfsg1-1 Severity: serious Justification: FTBFS Presumably due to a new matplotlib, but I'm just guessing... .pybuild/test_python3.9/pymatgen/electronic_structure/tests/test_plotter.py . [ 55%] .F === FAILURES

Bug#1000360: segyio: diff for NMU version 1.8.3-1.1

2021-11-21 Thread Stefano Rivera
) unstable; urgency=medium + + * Non-maintainer upload. + * Python 3.10 support. (Closes: #1000360) +- Patch: Import from collections.abc. +- Patch: PY_SSIZE_T_CLEAN. + + -- Stefano Rivera Sun, 21 Nov 2021 22:51:13 -0400 + segyio (1.8.3-1) unstable; urgency=medium * New upstream

Bug#1000360: segyio: FTBFS with Python 3.10

2021-11-21 Thread Stefano Rivera
Source: segyio Version: 1.8.3-1 Severity: serious Tags: upstream patch Justification: FTBFS FTBFS with Python 3.10: Tests fail with: E AttributeError: module 'collections' has no attribute 'Mapping' See: https://buildd.debian.org/status/fetch.php?pkg=segyio=amd64=1.8.3-1%2Bb5=1637491602=0

Bug#1000359: FTBFS: test failure: External MBEDTLS version mismatch

2021-11-21 Thread Stefano Rivera
Source: python-biopython Version: 1.79+dfsg-1 Severity: serious Justification: FTBFS Control: block -1 with 1000358 python-biopython FTBFS with tests failing like so: == FAIL: test_tblastx

Bug#1000358: ncbi-blast+: Please rebuild against MBEDTLS 2.16.11

2021-11-21 Thread Stefano Rivera
Package: ncbi-blast+ Version: 2.11.0+ds-1 Severity: normal Affects: python-biopython Running blastn outputs: Critical: External MBEDTLS version mismatch: 2.16.9 headers vs. 2.16.11 runtime This causes python-biopython to FTBFS:

Bug#1000337: pairtools: diff for NMU version 0.3.0-3.1

2021-11-21 Thread Stefano Rivera
-0.3.0/debian/changelog 2021-09-22 09:50:11.0 -0400 +++ pairtools-0.3.0/debian/changelog 2021-11-21 16:13:08.0 -0400 @@ -1,3 +1,10 @@ +pairtools (0.3.0-3.1) unstable; urgency=medium + + * Non-maintainer upload. + * Patch: Support Python 3.10. (Closes: #1000337) + + -- Stefano

Bug#1000337: pairtools: FTBFS with Python 3.10

2021-11-21 Thread Stefano Rivera
Source: pairtools Version: 0.3.0-3 Severity: serious Tags: upstream patch Justification: FTBFS Forwarded: https://github.com/open2c/pairtools/pull/108 pairtools FTBFS with Python 3.10: == ERROR: pairtools

Bug#1000336: numba: FTBFS with Python 3.10

2021-11-21 Thread Stefano Rivera
Source: numba Version: 0.52.0-5 Severity: serious Tags: ftbfs upstream Justification: FTBFS Forwarded: https://github.com/numba/numba/issues/7562 numba isn't compatible with Python 3.10, yet. Upstream is working on it, see https://github.com/numba/numba/issues/7562 setup.py immediately fails

Bug#997448: mlpy: diff for NMU version 3.5.0+ds-1.3

2021-11-21 Thread Stefano Rivera
(Closes: #997448) + + -- Stefano Rivera Sun, 21 Nov 2021 10:46:25 -0400 + mlpy (3.5.0+ds-1.2) unstable; urgency=medium * Non-maintainer upload. diff -Nru mlpy-3.5.0+ds/debian/control mlpy-3.5.0+ds/debian/control --- mlpy-3.5.0+ds/debian/control 2020-06-12 10:20:54.0 -0400 +++ mlpy-3.5.0

Bug#1000317: cyvcf2: diff for NMU version 0.30.11-1.1

2021-11-21 Thread Stefano Rivera
+(Closes: #1000317) + + -- Stefano Rivera Sun, 21 Nov 2021 08:38:57 -0400 + cyvcf2 (0.30.11-1) unstable; urgency=medium * Fix watch URL diff -Nru cyvcf2-0.30.11/debian/patches/python-3.10.patch cyvcf2-0.30.11/debian/patches/python-3.10.patch --- cyvcf2-0.30.11/debian/patches/python-3.10.patch

Bug#1000317: cyvcf2: FTBFS with Python 3.10

2021-11-21 Thread Stefano Rivera
Source: cyvcf2 Version: 0.30.11-1 Severity: serious Tags: ftbfs patch Justification: FTBFS https://buildd.debian.org/status/fetch.php?pkg=cyvcf2=amd64=0.30.11-1%2Bb1=1637483151=0 Tests fail with: == ERROR:

Bug#1000315: compreffor: diff for NMU version 0.5.1-1.1

2021-11-21 Thread Stefano Rivera
) unstable; urgency=medium + + * Non-maintainer upload. + * Patch: Update collections.abc imports for Python 3.10 (Closes: #1000315) + + -- Stefano Rivera Sun, 21 Nov 2021 08:20:06 -0400 + compreffor (0.5.1-1) unstable; urgency=medium * Team upload diff -Nru compreffor-0.5.1/debian/patches

Bug#1000315: compreffor: FTBFS with Python 3.10

2021-11-21 Thread Stefano Rivera
Source: compreffor Version: 0.5.1-1 Severity: serious Tags: ftbfs https://buildd.debian.org/status/fetch.php?pkg=compreffor=amd64=0.5.1-1%2Bb1=1637495198=0 Tests fail with: ERRORS _ ERROR collecting

Bug#999538: pytables: diff for NMU version 3.6.1-5.1

2021-11-20 Thread Stefano Rivera
; urgency=medium + + * Non-maintainer upload. + * Patch: Fix FTBFS with numpy >= 1.20 (Closes: #999538) + * Patch: Fix FTBFS with Python 3.10. + * Install Python 3.10 C Extensions (2-digit minor version). + + -- Stefano Rivera Sat, 20 Nov 2021 23:32:58 -0400 + pytables (3.6.1-5) unsta

Bug#1000279: FTBFS: CMake Error: Unknown argument --enable-perl

2021-11-20 Thread Stefano Rivera
Source: openscap Version: 1.3.4-1 Severity: important Tags: ftbfs In the Python 3.10 binNMUs, openscap FTBFS with: debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -Bbuild-python-3.10 -- --enable-sce --enable-perl -DPERL_VERSION=5.32

Bug#999397: siphashc: diff for NMU version 2.1-0.1

2021-11-20 Thread Stefano Rivera
pped support for Python 2. + +1.3 +--- + +* Changed license to ISC. +* Fixed depreciation warning on Python 3.8. + 1.2 --- diff -Nru siphashc-1.2/debian/changelog siphashc-2.1/debian/changelog --- siphashc-1.2/debian/changelog 2019-01-25 13:02:55.0 -0400 +++ siphashc-2.1/debia

Bug#999381: python-pairix: diff for NMU version 0.3.7-4.1

2021-11-19 Thread Stefano Rivera
-01 10:07:39.0 -0400 +++ python-pairix-0.3.7/debian/changelog 2021-11-19 22:21:23.0 -0400 @@ -1,3 +1,10 @@ +python-pairix (0.3.7-4.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Patch: Avoid tests failing under Python 3.10. (Closes: #999381) + + -- Stefano Rivera

Bug#999381: python-pairix ftbfs with Python 3.10 (test failures)

2021-11-19 Thread Stefano Rivera
Control: affects -1 python3.10 Hi Matthias (2021.11.10_11:31:16_-0400) This looks like fallout from https://bugs.python.org/issue45475, a Python 3.10 regression. python-pairix is easily patched to avoid hitting the bug, though. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683

Bug#997719: libvirt-python: FTBFS: ERROR: failed virDomainGetMessages

2021-11-18 Thread Stefano Rivera
Hi Lucas (2021.10.24_07:40:18_-0400) Looks like a mismatch between libvirt-python and libvirt itself, that would be resolved by upgrading it to version 7.6.0 (or later). SR

Bug#997363: libtorrent-rasterbar: FTBFS: configure: error: *** A compiler with support for C++17 language features is required.

2021-11-18 Thread Stefano Rivera
Presumably resolved in 2.0.0 in NEW, that doesn't use autoconf any more. SR

Bug#999691: reprotest: Version check in debian/rules breaks down-stream distro versioning

2021-11-14 Thread Stefano Rivera
Source: reprotest Version: 0.7.18 Severity: normal Tags: patch Adding a suffix is pretty common in a downstream distro. For example, Ubuntu adds ubuntu1 when modifying a package, or build1 when doing a no-change upload (Ubuntu doesn't have binNMUs). Is the expectation that setup.py should have

Bug#999689: reprotest: autopkgtest missing dependency on diffoscope

2021-11-14 Thread Stefano Rivera
Source: reprotest Version: 0.7.17 Severity: normal Tags: patch Fixing #988964 broke the "not need_builddeps" autopkgtest: https://ci.debian.net/packages/r/reprotest/unstable/amd64/ It has failed since 0.7.16. The easy fix is: diff --git a/debian/tests/control b/debian/tests/control index

Bug#998625: python-spinners: diff for NMU version 0.0~git20200220.a73d561-1.1

2021-11-05 Thread Stefano Rivera
~git20200220.a73d561-1.1) unstable; urgency=medium + + * Non-maintainer upload. + * Drop tox Build-Dep, we're doing build-time tests without it, fixes FTBFS +with dh-python >= 5.20211105. (Closes: #998625) + * Add missing Build-Depends on python3-setuptools. + + -- Stefano Rivera Fri, 05

Bug#998623: pysha3: diff for NMU version 1.0.2-4.2

2021-11-05 Thread Stefano Rivera
+with dh-python >= 5.20211105 (Closes: #998623). + + -- Stefano Rivera Fri, 05 Nov 2021 12:14:01 -0700 + pysha3 (1.0.2-4.1) unstable; urgency=medium * Non-maintainer upload. diff -Nru pysha3-1.0.2/debian/control pysha3-1.0.2/debian/control --- pysha3-1.0.2/debian/control 2020-01-19 01

Bug#998625: python-spinners: FTBFS with dh-python 5.20211105 due to missing dependencies

2021-11-05 Thread Stefano Rivera
Source: python-spinners Version: 0.0~git20200220.a73d561-1 Severity: serious Tags: patch ftbfs Justification: fails to build from source dh-python 5.20211105 fixed tox detection based on Build-Depends, which causes it to try to run tox tests on python-deprecated. This fails because the tox.ini

Bug#998624: python-deprecated: FTBFS with dh-python 5.20211105 due to missing dependencies

2021-11-05 Thread Stefano Rivera
Source: python-deprecated Version: 1.2.13-1 Severity: serious Tags: patch ftbfs Justification: fails to build from source dh-python 5.20211105 fixed tox detection based on Build-Depends, which causes it to try to run tox tests on python-deprecated. This fails because the tox.ini specifies

Bug#998623: pysha3: FTBFS with dh-python 5.20211105 due to missing tox.ini

2021-11-05 Thread Stefano Rivera
Source: pysha3 Version: 1.0.2-4.1 Severity: serious Tags: patch ftbfs Justification: fails to build from source (but built successfully in the past) dh-python 5.20211105 fixed tox detection based on Build-Depends, which causes it to try to run tox tests on pysha3. As pysha3 doesn't have a

Bug#997469: dh-python doesn't allow local connections via urllib

2021-10-26 Thread Stefano Rivera
ress pybuild exporting http_proxy. FWIW, applied a patch to document this. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#997469: dh-python doesn't allow local connections via urllib

2021-10-26 Thread Stefano Rivera
=' in debian/rules, and that will suppress pybuild exporting http_proxy. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#982298: dh-python: deprecated test command 'python3.9 setup.py test'

2021-10-23 Thread Stefano Rivera
empted supervisor_4.2.2-2_arm64.build:Status: attempted +supysonic_0.6.2+ds-3_arm64.build:Status: attempted +toro_1.0.1-4_arm64.build:Status: attempted That's enough that I'm not about to just upload this to unstable, unless someone persuades me that it's a good idea to. SR -- Stefano Rivera

Bug#997662: lintian: Incorrect tag: package-contains-python-dot-directory for .egg-info directories

2021-10-23 Thread Stefano Rivera
Package: lintian Version: 2.110.0 Severity: normal Hi, I see lintian 2.110 is now emitting a package-contains-python-dot-directory tag for .egg-info directories in binary packages. We do not want to encourage package maintainers to remove .egg-info directories from their Python binary packages.

Bug#982298: dh-python: deprecated test command 'python3.9 setup.py test'

2021-10-22 Thread Stefano Rivera
hat for distutils plugin. I will not change it in this > release cycle as I don't know how many packages depend on that It's the next cycle, so let's do this. I'm doing some testing to see what effect this will have. There are about 500 affected packages, as far as I can tell. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#996949: dh-python: Errors in python3 maintainer scripts caused by ordering of d.control fields

2021-10-21 Thread Stefano Rivera
A scan of unstable doesn't turn up any affected packages, phew. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#996949: dh-python: Errors in python3 maintainer scripts caused by ordering of d.control fields

2021-10-21 Thread Stefano Rivera
of d.control. Ack, I'll try to get that fixed ASAP. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#994045: Root cause of 994045

2021-10-20 Thread Stefano Rivera
ptions.HTTPError is requests.exceptions.HTTPError True >>> requests.__path__ ['/usr/share/python-wheels/requests-2.21.0-py2.py3-none-any.whl/requests'] SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#994045: python-pip-whl: pip 18.1 raises EnvironmentError on 404 from index, which leads to PIP_FIND_LINKS being ignored

2021-10-20 Thread Stefano Rivera
etuptools and pip still need to be installable from your index or you'll still hit this bug. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#994952: Fails to create Python 3 virtualenv in buster: 404 Client Error: Not Found for url: https://pypi.org/simple/pkg-resources/

2021-10-20 Thread Stefano Rivera
Filed bug #996929 to update Buster. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#996929: buster-pu: package python-virtualenv/15.1.0+ds-2

2021-10-20 Thread Stefano Rivera
:33.0 -0700 @@ -1,3 +1,9 @@ +python-virtualenv (15.1.0+ds-2+deb10u1) buster; urgency=medium + + * Avoid attempting to install pkg_resources from PyPI. (Closes: #994952) + + -- Stefano Rivera Wed, 20 Oct 2021 15:48:33 -0700 + python-virtualenv (15.1.0+ds-2) unstable; urgency=medium

Bug#994952: Fails to create Python 3 virtualenv in buster: 404 Client Error: Not Found for url: https://pypi.org/simple/pkg-resources/

2021-10-20 Thread Stefano Rivera
empty directory listing, so things are working again. However, there is a simple change we can make to avoid needing this directory to exist, so I'll run that by the stable release team. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#994538: dh-python: alias /usr/bin/python disappears after installation

2021-10-15 Thread Stefano Rivera
at was the outcome of this action? >* What outcome did you expect instead? > > *** End of the template - remove these template lines *** Please include *something* to explain what happened, otherwise we'll close this bug. The questions in the template above would be the things to answ

Bug#994979: python-tomli: please make the build reproducible

2021-10-15 Thread Stefano Rivera
FYI, this will be fixed in the next dh-python upload: https://salsa.debian.org/python-team/tools/dh-python/-/commit/2ef6ff13748984258d5da000c17d9cdad707b9ae SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#732713: dh-python testsuite fails (wrong assumptions about symlink handling)

2021-10-13 Thread Stefano Rivera
Control: retitle -1 test t201 fails: has wrong assumptions about symlink handling Control: severity -1 minor Given the death of Python 2.7, demoting the test20* issues. Going to re-enable the build-time test site without them. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683

Bug#934372: snapd: does not work under cgroup v2 at all

2021-10-10 Thread Stefano Rivera
Control: forwarded -1 https://bugs.launchpad.net/snapd/+bug/1926283 Control: severity -1 important Bumping the severity back up, because this breaks unrelated software (#996036), also re-pointing at the current upstream issue. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#996036: LXD: snap lxd cgroup noise causes VirtSubproc to fail

2021-10-10 Thread Stefano Rivera
be a warning in snapd to silence that warning? Yeah, I'm with you on that. It's an annoying message. Also, found another place I had to hack (my local hacks all got blown away by the recent autopkgtest upload, so it was a good time to forward them...) SR -- Stefano Rivera http://tumblewee

Bug#996036: LXD: snap lxd cgroup noise causes VirtSubproc to fail

2021-10-10 Thread Stefano Rivera
qemu-efi-arm pn qemu-system ii qemu-utils1:6.1+dfsg-6 ii schroot 1.6.10-12 pn vmdb2 -- no debconf information From d420aa1953b891778b57a96a53cb58774a76c6a2 Mon Sep 17 00:00:00 2001 From: Stefano Rivera Date: Sun, 10 Oct 2021 10:58:37 -0700 Subject: [PATCH]

Bug#941830: pypy3: "import numpy" complains with: "Original error was: No module named 'numpy.core._multiarray_umath'"

2021-10-06 Thread Stefano Rivera
pypy3 too, yet. SR -- Stefano Rivera http://tumbleweed.org.za/ +1 415 683 3272

Bug#995795: mercurial: Cloning a local repo with long filenames fails (fixed upstream in 5.9.1)

2021-10-05 Thread Stefano Rivera
Package: mercurial Version: 5.9-3 Severity: normal Tags: upstream patch Forwarded: https://bz.mercurial-scm.org/show_bug.cgi?id=6581 Mercurial 5.9 fails to locally clone my pypy hg repo, due to https://bz.mercurial-scm.org/show_bug.cgi?id=6581 Fixed by https://phab.mercurial-scm.org/D11340 in

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