Source: phipack
Version: 0.0.20160614-3
Tags: patch upstream
User: debian-cr...@lists.debian.org
Usertags: ftcbfs
phipack fails to cross build from source, because it uses the variable
CXX for storing a C compiler. During cross compilation dh_auto_build
overrides it with a C++ compiler and the build fails. Please consider
using standard variables. I'm attaching a patch for your convenience.
Helmut
--- phipack-0.0.20160614.orig/src/Makefile
+++ phipack-0.0.20160614/src/Makefile
@@ -1,7 +1,7 @@
# compiler
-#CXX = /opt/ibmcmp/vac/6.0/bin/xlc
-CXX = gcc
-CXXFLAGS += -O3 -Wall
+#CC = /opt/ibmcmp/vac/6.0/bin/xlc
+CC = gcc
+CFLAGS += -O3 -Wall
# target macros
PhiOBJ = normal.o stats.o maxChi.o main.o queue.o graphCode.o fasta.o phylip.o mem.o misc.o pairScore.o seqManip.o global.o
@@ -12,18 +12,18 @@
# implicit construction rule
%.o : %.c
- $(CXX) -c $(CXXFLAGS) $< -o $@
+ $(CC) -c $(CFLAGS) $< -o $@
Phi: $(PhiOBJ)
- $(CXX) $(CXXFLAGS) -o Phi $(PhiOBJ) -lm $(LDFLAGS)
+ $(CC) $(CFLAGS) -o Phi $(PhiOBJ) -lm $(LDFLAGS)
cp Phi ../
cd ppma_2_bmp && ${MAKE}
cp ppma_2_bmp/ppma_2_bmp ../
Profile: $(ProfOBJ)
- $(CXX) $(CXXFLAGS) -o Profile $(ProfOBJ) -lm $(MYLIB) $(LDFLAGS)
+ $(CC) $(CFLAGS) -o Profile $(ProfOBJ) -lm $(MYLIB) $(LDFLAGS)
cp Profile ../
clean : FORCE
rm -f *.o
