Bug#904998: closed by Matthias Klose (Bug#904998: fixed in gcc-8 8.2.0-2)

2018-08-03 Thread Alastair McKinstry
::local_Rb_tree_decrement It has been closed by Matthias Klose . Their explanation is attached below along with your original report. If this explanation is unsatisfactory and you have not received a better one in a separate message then please contact Matthias Klose by replying to this email. -- Alastair

Bug#900875: RM: ccseapps -- ROM; Obsolete; replaced by AMReX

2018-06-06 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal This was packaged as a dependency of the visualization tool VisIt. However it has since been deprecated and superceded by AMReX, with no dependencies within Debian. Time to remove.

Bug#882033: libpmi2-0-dev,libpmix-dev: error when trying to install together: both ship libpmi2.so

2017-11-23 Thread Alastair McKinstry
e Process Management Interface (PMI): the Slurm one, the OpenMPI ("PMix") and the MPICH one.  They are all expected to have the same ABI. > On 2017-11-23 09:22, Gennaro Oliva wrote: >> On Wed, Nov 22, 2017 at 10:20:17AM +, Alastair McKinstry wrote: >>> Yes, this wou

Bug#882033: libpmi2-0-dev,libpmix-dev: error when trying to install together: both ship libpmi2.so

2017-11-24 Thread Alastair McKinstry
On 23/11/2017 16:05, Andreas Beckmann wrote: > On 2017-11-23 16:28, Alastair McKinstry wrote: >> There are three _implementations_ of the Process Management Interface >> (PMI): the Slurm one, the OpenMPI ("PMix") and the MPICH one.  They are >> all expected to ha

Bug#901874: openmpi-bin is wrongly marked Multi-Arch: foreign

2018-06-20 Thread Alastair McKinstry
onfig  rather than mpicc back to upstream. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#901874: Fwd: Re: Bug#901874: openmpi-bin is wrongly marked Multi-Arch: foreign

2018-06-20 Thread Alastair McKinstry
Forwarded Message Subject:Re: Bug#901874: openmpi-bin is wrongly marked Multi-Arch: foreign Date: Wed, 20 Jun 2018 07:19:01 +0100 From: Alastair McKinstry Organization: Debian To: Helmut Grohne , 901...@bugs.debian.org, Debian Bug Tracking System On 19

Bug#901874: openmpi-bin is wrongly marked Multi-Arch: foreign

2018-06-23 Thread Alastair McKinstry
On 20/06/2018 21:33, Helmut Grohne wrote: On Wed, Jun 20, 2018 at 07:19:01AM +0100, Alastair McKinstry wrote: As the person responsible for this to date in openmpi / mpich, my thinking is this: (1) mpicc, etc. wrappers should be deprecated*, but are widespread amongst the community. I&#

Bug#902101: openmpi: OpenMPI 3 on ppc64el seems unstable

2018-06-23 Thread Alastair McKinstry
t case yet (unlike armel, #902041). (Maybe related: on powerpc all MPI tests in dune-grid just run into a timeout, but that one is not a release arch so I care less.) Ansgar -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Commander Vimes didn’t like the phrase “The innocent ha

Bug#902976: ITP: netcdf-parallel -- Parallel build of NetCDF library

2018-07-04 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: netcdf-parallel Version : 4.6.1 Upstream Author : University Corporation for Atmospheric Research/Unidata * URL : https://github.com/Unidata/netcdf-c/releases * License : NetCDF (BSD

Bug#902976: ITP: netcdf-parallel -- Parallel build of NetCDF library

2018-07-04 Thread Alastair McKinstry
On 04/07/2018 14:45, Julien Cristau wrote: On 07/04/2018 12:37 PM, Alastair McKinstry wrote: This package is necessary because it is not possible currently to enable all functionality in any single build of NetCDF - use of Compression, etc. in netcdf-4 requires a serial build. It is hoped

Bug#885736: ggcov: Depends on libgnomeui

2018-01-03 Thread Alastair McKinstry
Forwarded to upstream On 29/12/2017 15:52, Jeremy Bicha wrote: > Source: ggcov > Version: 0.9-19 > Severity: important > User: pkg-gnome-maintain...@lists.alioth.debian.org > Usertags: oldlibs libgnomeui gconf libglade > Tags: sid buster > > -- Alastair McKinstry, , , h

Bug#911230: gcc-8 : ICE on openmpi 3.1*

2018-10-17 Thread Alastair McKinstry
Package: gcc-8 Version: 8.2.0-7 OpenMPI FTBFS with gcc-8 due to an ICE on ia64. Example logs can be seen here: https://buildd.debian.org/status/fetch.php?pkg=openmpi&arch=ia64&ver=3.1.2-6&stamp=1539058642&raw=0 thanks Alastair McKinstry -- Alastair McKin

Bug#395573: RFP: visit -- interactive parallel visualization and graphical analysis tool

2018-10-21 Thread Alastair McKinstry
Hi Alastair, Are you still working on visit packaging for Debian? I'm very interested in the package. However I fail myself to get it built at all from source... Regards, -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#922683: gcc-8: ICE with -O2 / -O3 on some libpgmath (flang compiler)

2019-02-19 Thread Alastair McKinstry
<>/runtime/libpgmath/lib/common/cdpowi.c:51:5: note: in expansion of macro 'ZMPLX_CALL_ZR_Z_Z' 15208: // ZMPLX_CALL_ZR_Z_Z(__mth_i_cddiv,z,c1plusi0,z); 15208: // ^ Regards Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers uns

Bug#922688: findent: Please drop build-depend on gfortran

2019-02-19 Thread Alastair McKinstry
Package: findent Version: 2.8.2-1 Severity: minor Dear Maintainer, I'm rebuilding Debian with flang, as a Secondary Fortran compiler. In the process of this, I see that your package 'findent' build depends on gfortran. It doesn't need to, as it doesn't use gfortran to build. You could use "Rec

Bug#922688: findent: Please drop build-depend on gfortran

2019-02-19 Thread Alastair McKinstry
of findent, or, if that is possible, in the current version of findent. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#922740: odb-api: ODB-API fails to compile with Flang Fortran compiler

2019-02-19 Thread Alastair McKinstry
Source: odb-api Severity: wishlist Dear Maintainer, Please make it possible to compile with Flang. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-3-amd64 (SMP w/2 CPU cores) Kernel taint

Bug#922746: adios FTBFS with flang compiler

2019-02-20 Thread Alastair McKinstry
Source: adios Severity: minor Dear Maintainer, Please make adios compile with the Flang fortran compiler. B-D on gfortran | fortran-compiler -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0

Bug#922747: cdftools FTBFS with flang compiler

2019-02-20 Thread Alastair McKinstry
Package: cdftools Severity: minor Dear Maintainer, Please enable compilation with the Flang compiler -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-3-amd64 (SMP w/2 CPU cores) Kernel tain

Bug#922749: cmor FTBFS with the flang fortran compiler

2019-02-20 Thread Alastair McKinstry
Source: cmor Severity: minor Dear Maintainer, Please make it possible to compile CMOR with the Flang Fortran compiler. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-3-amd64 (SMP w/2 CPU

Bug#922748: cdo FTBFS with flang compiler

2019-02-20 Thread Alastair McKinstry
Package: cdo Version: 1.9.6-1 Severity: minor Dear Maintainer, Please make it possible to compile cdo with the flang Fortran compiler. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-3-am

Bug#922753: exodusii FTBFS with the Flang fortran compiler

2019-02-20 Thread Alastair McKinstry
Source: exodusii Severity: minor Dear Maintainer, Please make it possible to compile and run ExodusII with the Flang Fortran compiler. Thanks -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.1

Bug#922820: pyferret FTBFS with the Flang Fortran compiler

2019-02-20 Thread Alastair McKinstry
Source: pyferret Severity: minor Dear Maintainer, Please make it possible to compile pyferret with the Flang Fortran compiler -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-3-amd64 (SMP w

Bug#922819: ferret-vis FTBFS with the Flang Fortran compiler

2019-02-20 Thread Alastair McKinstry
Package: ferret-vis Version: 7.4.4-2 Severity: minor Dear Maintainer, Please make it possible to build ferret-vis with the Flang Fortran compiler. Thanks -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel

Bug#922827: flexpart FTBFS with Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Package: flexpart Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922828: flextra FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Package: flextra Version: 5.0-12 Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd

Bug#922830: hdf-eos5 FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: hdf-eos5 Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-3-am

Bug#922829: hdf-eos4 FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: hdf-eos4 Version: 2.20v1.00-1 Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architect

Bug#922839: libgetdata FTBFS with Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: libgetdata Severity: minor Dear Maintainer, Please make it possible to build with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922840: magics++ FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Package: magics++ Version: 3.3.1-1 Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd

Bug#922841: metview FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: metview Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922848: mpich FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Package: mpich Version: 3.3-3 Severity: minor Dear Maintainer, Please make it possible to compile mpich with the Flang Fortran compiler. Thanks Alastair -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel

Bug#922849: openmpi FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: openmpi Severity: minor Dear Maintainer, Please make it possible to compile the openmpi with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd

Bug#922851: oasis3 FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: oasis3 Severity: minor Dear Maintainer, Please make it possible to compile oasis3 with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_6

Bug#922850: ncl FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: ncl Severity: minor Dear Maintainer, Please make it possible to compile ncl with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922853: pnetcdf FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: pnetcdf Severity: minor Dear Maintainer, Please make it possible to compile pnetcdf with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_6

Bug#922852: open-coarrays FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: open-coarrays Severity: minor Dear Maintainer, please make it possible to compile open-coarrays with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architect

Bug#922855: paraview FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: paraview Severity: minor Dear Maintainer, Please make it possible to build with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922856: qd FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: qd Severity: minor Dear Maintainer, Please make it possible to compile qd with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922858: spherepack FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: spherepack Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_6

Bug#922857: silo-llnl FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: silo-llnl Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#922859: xdmf FTBFS with the Flang Fortran compiler

2019-02-21 Thread Alastair McKinstry
Source: xdmf Severity: minor Dear Maintainer, Please make it possible to compile with the Flang Fortran compiler. Thanks Alastair McKinstry -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Ker

Bug#923103: flang-7: flang hangs building pnetcdf.f90

2019-02-23 Thread Alastair McKinstry
Package: flang-7 Version: 20181226-2 Severity: normal Dear Maintainer, With OpenMPI built with flang, pnetcdf builds hang: alastair@debian:~/deb-packages/pnetcdf/pnetcdf-1.11.0/build-static/src/binding/f90$ /usr/bin/mpif90.openmpi --verbose -O0 -I. -I../../../../src/binding/f90 -c pnetcdf.f9

Bug#922869: libtool: file date issue

2019-02-27 Thread Alastair McKinstry
Hi, Where did you see this error ? I cannot repeat it. Builds work fine locally / pdebuild, and it appears the buildds ? regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#981289: udunits breaks gnudatalanguage autopkgtest

2021-01-29 Thread Alastair McKinstry
unit Could you check that? Best regards Ole -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-6847928 Green Party Councillor, Galway County Council

Bug#993581: ITP: ecmwflibs -- A Python package that wraps some of ECMWF libraries to be used by Python interfaces to ECMWF software.

2021-09-03 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: ecmwflibs Version : 0.13.3 Upstream Author : European Centre for Medium-Range Forecasts * URL : https://github.com/ecmwf/ecmwflibs * License

Bug#993624: RM: eckit [armel i386 armhf mipsel] -- ROM; 32-bit archs no longer supported

2021-09-03 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal Please remove the 32-bit archs - they are no longer supported upstream

Bug#993631: cfgrib FTBFS: test failures

2021-09-03 Thread Alastair McKinstry
This is a bug in python3-eccodes which now depends on ecmwflibs. Ecmwflibs in now in the NEW queue On 03/09/2021, 21:51, "Adrian Bunk" wrote: Source: cfgrib Version: 0.9.9.0-1 Severity: serious Tags: ftbfs https://buildd.debian.org/status/logs.php?pkg=cfgrib&ver=0.9.9.0-1

Bug#993992: i386 regression

2021-09-13 Thread Alastair McKinstry
The bugs on mips, mips64el were unrelated – a problem with the proj8.patch (headers now conflicting due to proj.h in proj8 conflicting with hdf-eos5). This was resolved in 6.6.2-9. Remaining is a definite regression with gcc, or more correctly gfortran ; testing with gfortran 10.2.1-6 from b

Bug#994480: ball: FTBFS following glibc change

2021-09-16 Thread Alastair McKinstry
Package: ball Version: 1.5.0+git20180813.37fc53c-6) Severity: serious Tags: ftbfs Justification: 4 FTBFS The package FTBFS : /srv/build/glew/rebuild/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/XDRPersistenceManager.h:12:10: fatal error: rpc/types.h: No such file or directory 12 | #incl

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-13 Thread Alastair McKinstry
ing libpmix-dev when building to avoid accidental collisions. We could put Build-Conflicts: libpmix-dev into openmpi but we need to test this. Regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-15 Thread Alastair McKinstry
-1, so both need to migrate to testing. Did you already engage discussions with the release team? I did not find an unblock request. Lucas -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#984956: Still occurring here with 4.1.0-9

2021-05-26 Thread Alastair McKinstry
Alastair McKinstry Hi Can you confirm that openmpi 4.1.0-9 is present on all the nodes ? Regards Alastair From: Dominique Brazziel Reply to: Dominique Brazziel , <984...@bugs.debian.org> Date: Thursday 20 May 2021 at 13:03 To: "984...@bugs.debian.org" <984...@bugs.debia

Bug#989111: libopenmpi-dev: broken symlinks: /usr/lib/i386-linux-gnu/openmpi/lib/libmca_common_{ofi,ompio}.so

2021-05-26 Thread Alastair McKinstry
dev:i386) /usr/lib/i386-linux-gnu/openmpi/lib/libmca_common_ompio.so -> libmca_common_ompio.so.41.29.1 (libopenmpi-dev:i386) The corresponding libraries do not seem to be shipped in libopenmpi3 any longer. cheers, Andreas -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alasta

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-26 Thread Alastair McKinstry
Alastair On 20/05/2021 16:33, Paul Gevers wrote: Hi Alastair, On Sun, 16 May 2021 07:25:51 +0100 Alastair McKinstry wrote: No, I wanted to wait and check if there were any issues before issuing an unblock request. ucx is not bullseye material, it doesn't comply at all with the release poli

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-27 Thread Alastair McKinstry
Ok, openmpi, redone ucx (to avoid 1.10.1~rc1 ) uploaded and unblock sent. Alastair On 16/05/2021, 06:39, "Lucas Nussbaum" wrote: Hi Alaitair, Thanks a lot for fixing this. Unfortunately, I noticed that the upload to unstable was built against ucx 1.10.1~rc1-1, so both need t

Bug#982601: python3-paraview Conflicts: python3-vtk9

2021-02-12 Thread Alastair McKinstry
python3-paraview has just been given Conflicts: python3-vtk9, which is a little confusing. Does it mean python3-paraview replaces python3-vtk9? Or should not python3-paraview not be used at all? (obviously there are other packages which use vtk via python). For this release, p

Bug#992999: ITP: unyt -- Python package for handling numpy arrays with units.

2021-08-26 Thread Alastair McKinstry
about units. It is a new build dependency of the "yt" package. I will maintain it within the Debian Python team. Salsa dir is https://salsa.debian.org/python-team/packages/unyt Best regards Ole -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-684

Bug#992999: ITP: unyt -- Python package for handling numpy arrays with units.

2021-08-26 Thread Alastair McKinstry
8.21 11:36, Alastair McKinstry wrote: How does this interact with xarray, etc? I don't know; the reason to package it is that it is a new requirement of the "yt" package. It was first developed within yt, and then separated. There is another attempt to use units in the "astropy&qu

Bug#970715: libucx0: Not installable in unstable

2020-09-22 Thread Alastair McKinstry
-- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-6847928 Green Party Councillor, Galway County Council

Bug#932208: RM: grib-api/1.28.0-2

2019-07-16 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: rm grib-api should be removed from Debian. It is obsolete upstream, being replaced by eccodes (already in buster). -- System Information: Debian Release: 10.0 APT prefers stable APT policy: (50

Bug#961669: ITP: gftl-shared -- Common gFTL containers for Fortran intrinsic types

2020-05-27 Thread Alastair McKinstry
7;d appreciate if > someone could have a look on how to organize the package structure > (modules? libs?) and give me hints. > > Best regards > > Ole > -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#961108: openmpi: providing 64-bit MPI

2020-06-01 Thread Alastair McKinstry
fdefault-integer-8). This level is needed in order for > MUMPS (and hence PETSc) to use 64-bit BLAS, and this is the > configuration which requires 64-bit MPI. Regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#962189: ITP: ucx -- A high performance communication library for HPC, AI, Data analytics, and beyond

2020-06-04 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: ucx Version : 1.8.0 Upstream Author : Mellanox Ltd. * URL : https://openucx.github.io/ucx/index * License : BSD Programming Lang: C Description : A high performance

Bug#978618: RM: odb-api -- ROM; obsolete and replaced upstream

2020-12-29 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal odb-api has been unsupported upstream and replaced by 'odc', which is now in Debian testing. odb no longer compiles due to changes in its dependencies (eccodes, eckit)

Bug#951031: libtool: remove dates from .info and .html documentation

2021-01-01 Thread Alastair McKinstry
well, vagrant Best Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#839387: close

2021-01-05 Thread Alastair McKinstry
close 839387 thanks I'm closing this bug as (1) running under root is strongly deprecated, and (2) other options are available. Regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#971907: nmu: ecflow-5.5.3-1

2020-10-09 Thread Alastair McKinstry
stair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#954272: slurmd: SLURM not working with OpenMPI

2020-10-13 Thread Alastair McKinstry
ules so the path was ok, but looking at slurm-llnl debian/rules its clear slurmd uses "--with-pmix=/usr/lib/x86_64-linux-gnu/pmix"  which needs to be updated. libX.so files are normally development-only ; I'll move libpmix.so into libpmix2 from libpmix-dev to fix the above

Bug#971669: libopenmpi3: armel mipsel: mca_pmix_pmix3x.so: undefined symbol: OPAL_MCA_PMIX3X_PMIx_Get_version

2020-10-13 Thread Alastair McKinstry
of *_pmix3x.so. Need to figure out whats different between the sid schroot on abel and the buildds. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#972213: boost1.71: Please indicate some way which python versions you support

2020-10-14 Thread Alastair McKinstry
Package: boost1.71 Version: 1.71.0-7 Severity: normal I maintain the package "ecflow" which uses libboost-python-dev. Now with the transition to python3.9, ecflow will support (where possible) multiple python versions. Currently it supports python3.8 but not python3.9 ; this may be fixed in a bi

Bug#972198: marked as done (ecflow b-d's on python3-all-dev, but only builds for the default python3 version)

2020-10-15 Thread Alastair McKinstry
e Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- Alastair McKinstry, , ,

Bug#972213: boost1.71: Please indicate some way which python versions you support

2020-10-15 Thread Alastair McKinstry
On 15/10/2020 08:13, Giovanni Mascellani wrote: Hi, Il 14/10/20 15:52, Alastair McKinstry ha scritto: I maintain the package "ecflow" which uses libboost-python-dev. Now with the transition to python3.9, ecflow will support (where possible) multiple python versions. Currently i

Bug#972213: boost1.71: Please indicate some way which python versions you support

2020-10-16 Thread Alastair McKinstry
e consumed. That sounds like a useful approach. The ecflow build could access the provided versions via   dpkg -s libboost-python${BOOST_VERSION} | grep Provides That works. Code can be added that the package fails to rebuild if it can't get the necessary provides. Thanks Alastair -- Ala

Bug#972624: ITP: metkit -- Meterological tookit implementing the MARS language

2020-10-21 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: metkit Version : 1.6.0 Upstream Author : European Centre for Medium-Range Weather Forecasts * URL : http://github.com/ecmwf/metkit * License : Apache-2 Programming Lang: C++, Fortran

Bug#972420: adios not supporting python3.9

2020-10-23 Thread Alastair McKinstry
x_pw_5adios_4file_19__repr__, /*tp_repr*/   |   ^~~~   |   |   |   PyObject* (*)(PyObject*) {aka _object* (*)(_object*)} regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#972873: ITP: fdb -- FDB (Fields DataBase) is a domain-specific object store for storing, indexing and retrieving GRIB data.

2020-10-25 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: fdb Version : 5.7.0 Upstream Author : ECMWF (European Centre for Medium-Range Weather Forecasts) * URL : http://github.com/ecmwf/fdb * License : Apache 2 Programming Lang: C

Bug#980033: libucx0: UCX ERROR rdma_create_event_channel failed: No such device

2021-01-13 Thread Alastair McKinstry
erbs-providers 33.0-1 ii libbinutils2.35.1-7 ii libc6 2.31-9 ii libibverbs133.0-1 ii libnuma1 2.0.12-1+b1 ii librdmacm1 33.0-1 libucx0 recommends no packages. libucx0 suggests no packages. -- no debconf information -- Alastair McKinstry,

Bug#980091: ITP: geocube -- Tool to convert geopandas vector data into rasterized xarray data.

2021-01-14 Thread Alastair McKinstry
Hi Magnus I'm happy to sponsor you. I'm one of the python-xarray maintainers. Alastair mckins...@debian.org On 14/01/2021, 10:18, "Magnus Hagdorn" wrote: Package: wnpp Severity: wishlist Owner: Magnus Hagdorn * Package name: geocube Version : 0.0.15 U

Bug#980107: ITP: python-rioxarray -- rasterio xarray extension

2021-01-14 Thread Alastair McKinstry
n it but will need a sponsor. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#980113: ITP: fpzip -- Floating Point array compression library

2021-01-14 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: fpzip Version : 1.3.0 Upstream Author : LLNL * URL : https://computing.llnl.gov/projects/fpzip * License : BSD Programming Lang: C Description : Floating Point array

Bug#979041: libopempi3: aborts python code due to libfabric fork() issues

2021-01-15 Thread Alastair McKinstry
Ugh. Thanks Drew. What are the contents of /etc/openmpi/openmpi-mca-params.conf on the node? Does a simple hello world (see Debian/tests/hello* ) work without errors in the environment ? Regards Alastair On 15/01/2021, 08:39, "Drew Parsons" wrote: Package: libopenmpi3 Version: 4.1.0-

Bug#965255: dh-fortran-mod: please make the output reproducible

2021-01-16 Thread Alastair McKinstry
On 16/01/2021 10:03, Chris Lamb wrote: Just checking whether you got the above re-open? :) Sorry I missed that. Done. Thanks Regards, -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#980463: ITP: scil -- Scientific Compression Library (SCIL)

2021-01-19 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: scil Version : 0.1 Upstream Author : Julian Kunkel * URL : https://github.com/JulianKunkel/scil * License : LGPL-3 Programming Lang: C Description : Scientific Compression

Bug#980448: pmix transition

2021-01-20 Thread Alastair McKinstry
Hi Graham Can these bugs be closed ? pmix tests are failing because of an openmpi bug , but its no longer due to pmix. Ditto, ucx errors that caused the failure are fixed in openmpi-4.1.0-6. openmpi 4.1.0-6 fails on libfabric: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=979041 I'm wo

Bug#951310: Note

2020-12-23 Thread Alastair McKinstry
functionality which may be included if it is later deemed necessary, but doesn't appear to be at this point. Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#973302: libboost-python1.71.0,: _Py_NewReference undefined in library

2020-10-28 Thread Alastair McKinstry
Package: libboost-python1.71.0, Version: 1.71.0-7+b1 Severity: important _Py_NewReference undefined in library breaks the package as used in python-escript. See bug #973225 -- System Information: Debian Release: 10.6 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64)

Bug#973615: ITP: odc -- Package to read ODB (Observation Database at ECMWF) data

2020-11-02 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: odc Version : 1.1.0 Upstream Author : European Centre for Medium-Range Forecasts (ECMWF) i...@ecmwf.int * URL : https://github.com/ecmwf/odc * License : Apache-2 Programming Lang: C

Bug#881967: libopenmpi3: ships libpmix.so.* which has a different SOVERSION than all other libs

2017-11-17 Thread Alastair McKinstry
Thanks for this report. With openmpi3, I intend to use the external package pmix (which will then be used by  both openmpi and mpich). pmix was accepted into unstable yesterday, and I am doing test builds of openmpi3 against it. I need to fix arch regressions on both pmix and openmpi3 in experime

Bug#882033: libpmi2-0-dev,libpmix-dev: error when trying to install together: both ship libpmi2.so

2017-11-22 Thread Alastair McKinstry
ch of the packages will > resolve the problem please reassign the bug to that package. You may > also register in the BTS that the other package is affected by the bug. > > Cheers, > > Andreas > > PS: for more information about the detection of file overwrite errors > of

Bug#882033: libpmi2-0-dev,libpmix-dev: error when trying to install together: both ship libpmi2.so

2017-11-22 Thread Alastair McKinstry
On 22/11/2017 09:32, Gennaro Oliva wrote: > Hi Alastair, > > On Wed, Nov 22, 2017 at 08:36:00AM +, Alastair McKinstry wrote: >> I was unfortunately not aware of pmi2 from slurm when packaging pmix2 >> from openmpi. > thanks for packaging pmix. > >> Possib

Bug#893563: whiptail has priority important

2018-03-22 Thread Alastair McKinstry
additional dependencies and > require X). See debconf(7). Interesting corner case. Wouldn't setting Recommends: whiptail | dialog on debconf fix this ? > Cheers, >Sven Regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Commander Vimes didn’

Bug#895193: transition: openmpi

2018-04-08 Thread Alastair McKinstry
s_affected = .depends ~ "libopenmpi2" | .depends ~ "libopenmpi3"; is_good = .depends ~ "libopenmpi3"; is_bad = .depends ~ "libopenmpi2"; Thanks Alastair McKinstry -- System Information: Debian Release: 9.4 APT prefers stable-updates APT policy: (500, &#x

Bug#888576: ITP: coda -- Library for the Common Data Access framework for Earth science file formats

2018-01-27 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: coda Version : 2.18.3 Upstream Author : CODA develpers, * URL : https://github.com/stcorp/coda/ * License : BSD Programming Lang: C, Fortran, Python Description : Library for

Bug#888683: ITP: harp -- Data harmonization toolset for Earth Observation formats

2018-01-28 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: harp Version : 1.1 Upstream Author : ST Corp, NL * URL : https://github.com/stcorp/harp * License : BSD Programming Lang: C, Python Description : Data harmonization toolset for

Bug#888683: ITP: harp -- Data harmonization toolset for Earth Observation formats

2018-01-31 Thread Alastair McKinstry
reas. > > On Sun, Jan 28, 2018 at 04:26:35PM +, Alastair McKinstry wrote: >> Package: wnpp >> Severity: wishlist >> Owner: Alastair McKinstry >> >> * Package name: harp >> Version : 1.1 >> Upstream Author : ST Corp, NL >>

Bug#889133: gfortran-7: gfortran mod files include full paths, making software bit unreproducible

2018-02-02 Thread Alastair McKinstry
harmap=UTF-8) (ignored: LC_ALL set to en_IE.UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Description: Drop the full pathname from module file descriptions, as this breaks reproducible builds Author: Alastair McKinstry Last-Updated: 2018-02-02 Forwarded:

Bug#871696: Partial fix

2018-02-02 Thread Alastair McKinstry
oment as it would be good for an Arm64 expert to write the calltree support. regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered. signature.asc Description: OpenPGP digital signature

Bug#889133: gfortran-7: gfortran mod files include full paths, making software bit unreproducible

2018-02-02 Thread Alastair McKinstry
o code that uses the value in the header, which appears to be fairly random based on the compile line (either foo.f90,  ./pkg/foo.f90 or /build/pkg/foo.f90 depending on build system). I imagine just using basename() is simpler and more likely to be accepted into production quickly (ie gcc-7

Bug#889715: libopenmpi-dev: problem in alternatives handling

2018-02-06 Thread Alastair McKinstry
epends on: > ii libc6 2.27-0experimental0 > ii libhwloc-dev2.0.0~rc2-2 > ii libhwloc5 1.11.9-1 > ii libibverbs-dev 16.1-2 > ii libopenmpi2 2.1.1-8 > ii openmpi-common 2.1.1-8 > > libopenmpi-dev recommends no packages. > > Versions of pack

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