'terralib -lemosR64 -leccodes
-leckit' \
- -DMETVIEW_EXTRA_INCLUDES='/usr/include/terralib/kernel' \
+ -DMETVIEW_EXTRA_INCLUDE_DIRS='/usr/include/terralib/kernel' \
-DMAGICS_HAVE_METVIEW=True \
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Package: wnpp
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Owner: Alastair McKinstry
* Package name: ansimarkup
Version : 1.4.0
Upstream Author : Georgi Valkov
* URL : https://github.com/gvalkov/python-ansimarkup
* License : BSD-3-Clause
Programming Lang: Python3
Description
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: atlas-ecmwf
Version : 0.19.0
Upstream Author : Willem Deconinck (willem.deconi...@ecmwf.int)
* URL : https://github.com/ecmwf/atlas
* License : Apache2
Programming Lang: C++, Fortran
Package: python3-numpy
Version: 1:1.16.2-5
Severity: normal
>>> import numpy.core._multiarray_umath
>>>
alastair@debian:~$ python3.8
Python 3.8.0 (default, Oct 27 2019, 15:36:55)
[GCC 9.2.1 20191022] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import
is in Experimental and I'm packaging upcoming expected
dependencies. cylc-7.8.4 may be backported to buster.
Regards
Alastair
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Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
This is a mini transition due to soname ABI changes in netcdf.
It only affects two packages: netcdf-parallel and adios, both of which
I maintain.
'netcdf-parallel' 4.7.3 now in
nnot proceed further as test_mpi_ocl.c
succeeds for me.
Regards
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) will not use pyro.
pyro2 is python3- clean
Regards
Alastair McKinstry
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rds
Alastair
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Package: wnpp
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Owner: Alastair McKinstry
* Package name: isodatetime
Version : 2.0.1
Upstream Author : Oliver Sanders
* URL : https://github.com/metomi/isodatetime
* License : LGPL 3.0
Programming Lang: Python
Description : Python ISO
reassign 935455 dask
thanks
This is a problem that occurs with dask and python3.8. python3.7 passes
fine.
It appears to be fixed upstream:
https://github.com/dask/dask/pull/5852
Regards
Alastair
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intained and will be removed soon.
>> Any update on this? This is the last package depending on llvm-7
>
> thanks
> S
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Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
This is a mini-transition for pmix.
The new pmix (pmix3) is in experimental; one further change is needed to add
Breaks/Replaces before an unstable upload,
(as libpmix2 and libpmix3
tch, but the package still FTBFS further on, see the
attached log.
Kind Regards,
Bas
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,
Paul
Thanks
Alastair
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Package: lintian
Version: 2.43.0
Severity: normal
/usr/share/lintian/checks/fortran.pm checks the 'mod' files for Fortran.
These are precompiled headers, and in gfortran have specific format including
version number.
The mod files are a gzip'ed lisp-like internal representation specific to
that dropped files.
+Closes: #935096
+ * Use debhelper-compat (= 12)
+ * Standards-Version: 4.4.0
+
+ -- Alastair McKinstry Sun, 08 Sep 2019 11:00:28 +0100
+
console-common (0.7.90) unstable; urgency=medium
* Drop Christian Perrier from Uploaders. Thanks for all the work, Bubulle!
diff -Nru
removed from _unstable_ until flang
gets fixed, though.
> Regards,
> Sandro
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Package: wnpp
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Owner: Alastair McKinstry
* Package name: metview-python
Version : 1.1.2
Upstream Author : European Centre for Medium-Range Weather Forecasts (ECMWF)
* URL : https://github.com/ecmwf/metview-python
* License : Apache-2
Hi,
flang is now merged into LLVM base.
I can build flang/f18 from the LLVM main install, but this targets llvm-11.
Are we likely to have llvm-11 (not necessarily default) in Debian
Bullseye ? what approach should be taken ?
regards
Alastair
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On 06/04/2020 14:54, Adam D. Barratt wrote:
> On Mon, 2020-04-06 at 15:23 +0200, Sebastiaan Couwenberg wrote:
>> On 4/6/20 3:05 PM, Alastair McKinstry wrote:
>>> Package: ftp.debian.org
>>> Severity: normal
>>>
>>> mpich-3.4a4-2 has a problem due
tures: i386
>
> Kernel: Linux 5.4.0-4-amd64 (SMP w/8 CPU cores)
> Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
> Locale: LANG=ko_KR.UTF-8, LC_CTYPE=ko_KR.UTF-8 (charmap=UTF-8),
> LANGUAGE=ko_KR.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: sys
ons of packages python3-xarray recommends:
>> ii python3-bottleneck 1.2.1+ds1-2+b1
>> ii python3-dask2.11.0+dfsg-1
>> ii python3-h5netcdf0.7.1-1
>> ii python3-netcdf4 1.5.3-1+b2
>> ii python3-zarr2.4.0+ds-1
>>
>> Versions of packages python3-xarray suggests:
>> pn python-xarray-doc
>> pn python3-cartopy
>> ii python3-matplotlib 3.2.1-1
>> pn python3-pydap
>> pn python3-rasterio
>> ii python3-scipy 1.3.3-3
>> pn python3-seaborn
>> ii python3-toolz 0.9.0-1
>>
>> -- no debconf information
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).
Regards
Alastair McKinstry
; siconosKO - #954497 - Removal from testing on the 29/03/2020
>>>> simpleitk KO - #949355 - Not in testing
>>> Sounds good. Go ahead.
>> Uploaded!
> hdf5 is currently blocked from migrating to testing on mpich due to #954244.
>
> Cheers,
> Emilio
>
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On 06/04/2020 12:53, Sebastiaan Couwenberg wrote:
> On 4/6/20 1:43 PM, Alastair McKinstry wrote:
>> There is a fix for #954244 in experimental but I there are other more
>> serious problems with mpich-3.4a4-2
>>
> Can't mpich in unstable be reverted to 3.3.3 which
/lib/dpkg/status
> libvtk7-dev:
> Installed: 7.1.1+dfsg1-2
> Candidate: 7.1.1+dfsg1-2
> Version table:
> *** 7.1.1+dfsg1-2 500
> 500 http://archive.ubuntu.com/ubuntu
> <http://archive.ubuntu.com/ubuntu> bionic/universe amd64 Packages
> 100 /var
the lib*gm2 packages. Nothing
> else is packaged using Modula-2.
Fortran modules should be in either:
/usr/lib/$ARCH/fortran/$compiler_version
with $compiler_version currently either gfortran-mod-15 or flang-mod-34
or, the traditional include directories /usr/include/* o
The files *.md.gz
the Reproducible Builds effort has come on a long way.
Would you consider applying this patch and uploading?
Regards,
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report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
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On 15/10/2020 08:13, Giovanni Mascellani wrote:
Hi,
Il 14/10/20 15:52, Alastair McKinstry ha scritto:
I maintain the package "ecflow" which uses libboost-python-dev. Now
with the transition to python3.9, ecflow will support (where
possible) multiple python versions. Currently i
ok, but looking at
slurm-llnl debian/rules
its clear slurmd uses "--with-pmix=/usr/lib/x86_64-linux-gnu/pmix"
which needs to be updated.
libX.so files are normally development-only ; I'll move libpmix.so into
libpmix2 from libpmix-dev to fix the above error.
Alastair
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Alast
e consumed.
That sounds like a useful approach.
The ecflow build could access the provided versions via
dpkg -s libboost-python${BOOST_VERSION} | grep Provides
That works.
Code can be added that the package fails to rebuild if it can't get the
necessary provides.
Thanks
Alastair
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Package: boost1.71
Version: 1.71.0-7
Severity: normal
I maintain the package "ecflow" which uses libboost-python-dev.
Now with the transition to python3.9, ecflow will support (where possible)
multiple python versions.
Currently it supports python3.8 but not python3.9 ; this may be fixed in a
of *_pmix3x.so. Need to figure out whats different
between the sid schroot on abel
and the buildds.
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Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: esdm
Version : 0.1.0
Upstream Author : Julian Kunkel
* URL : https://github.com/ESiWACE/esdm
* License : GPL
Programming Lang: C
Description : Earth System Data Middleware
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'd appreciate if
> someone could have a look on how to organize the package structure
> (modules? libs?) and give me hints.
>
> Best regards
>
> Ole
>
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s level is needed in order for
> MUMPS (and hence PETSc) to use 64-bit BLAS, and this is the
> configuration which requires 64-bit MPI.
Regards
Alastair
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5adios_4file_19__repr__, /*tp_repr*/
| ^~~~
| |
| PyObject* (*)(PyObject*) {aka _object* (*)(_object*)}
regards
Alastair
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Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: fdb
Version : 5.7.0
Upstream Author : ECMWF (European Centre for Medium-Range Weather Forecasts)
* URL : http://github.com/ecmwf/fdb
* License : Apache 2
Programming Lang: C
Package: libboost-python1.71.0,
Version: 1.71.0-7+b1
Severity: important
_Py_NewReference undefined in library breaks the package as used in
python-escript.
See bug #973225
-- System Information:
Debian Release: 10.6
APT prefers stable
APT policy: (500, 'stable')
Architecture: amd64
gfortran [fortran-compiler] 4:9.2.1-3.1
>
> -- Configuration Files:
> /etc/openmpi/openmpi-mca-params.conf changed:
> mtl_ofi_provider_exclude = shm,sockets,tcp,udp,rstream,verbs
> btl_openib_allow_ib = true
>
>
> -- no debconf information
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its component priority. Do you plan to make
> a hard dependency from OMPI to UCX?
>
> Brice
>
>
> Le 04/06/2020 à 12:38, Alastair McKinstry a écrit :
>> Package: wnpp
>> Severity: wishlist
>> Owner: Alastair McKinstry
>>
>> * Package name:
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: ucx
Version : 1.8.0
Upstream Author : Mellanox Ltd.
* URL : https://openucx.github.io/ucx/index
* License : BSD
Programming Lang: C
Description : A high performance
in this communicator will
now abort,
[monte:1320189] ***and potentially your MPI job)
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shouldn't be required
for that, right?
Lars
Regards
Alastair
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Package: ftp.debian.org
Severity: normal
odb-api has been unsupported upstream and replaced by 'odc', which is now in
Debian testing.
odb no longer compiles due to changes in its dependencies (eccodes, eckit)
this functionality which may be included if
it is later deemed necessary, but doesn't appear to be at this point.
Alastair
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Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: odc
Version : 1.1.0
Upstream Author : European Centre for Medium-Range Forecasts (ECMWF)
i...@ecmwf.int
* URL : https://github.com/ecmwf/odc
* License : Apache-2
Programming Lang: C
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: metkit
Version : 1.6.0
Upstream Author : European Centre for Medium-Range Weather Forecasts
* URL : http://github.com/ecmwf/metkit
* License : Apache-2
Programming Lang: C++, Fortran
close 839387
thanks
I'm closing this bug as (1) running under root is strongly deprecated,
and (2) other options are available.
Regards
Alastair
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Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
* Package name: scil
Version : 0.1
Upstream Author : Julian Kunkel
* URL : https://github.com/JulianKunkel/scil
* License : LGPL-3
Programming Lang: C
Description : Scientific Compression
Hi Magnus
I'm happy to sponsor you. I'm one of the python-xarray maintainers.
Alastair
mckins...@debian.org
On 14/01/2021, 10:18, "Magnus Hagdorn" wrote:
Package: wnpp
Severity: wishlist
Owner: Magnus Hagdorn
* Package name: geocube
Version : 0.0.15
tain it but
will need a sponsor.
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Package: wnpp
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Owner: Alastair McKinstry
* Package name: fpzip
Version : 1.3.0
Upstream Author : LLNL
* URL : https://computing.llnl.gov/projects/fpzip
* License : BSD
Programming Lang: C
Description : Floating Point array
On 16/01/2021 10:03, Chris Lamb wrote:
Just checking whether you got the above re-open? :)
Sorry I missed that. Done.
Thanks
Regards,
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Hi Graham
Can these bugs be closed ?
pmix tests are failing because of an openmpi bug , but its no longer due
to pmix.
Ditto, ucx errors that caused the failure are fixed in openmpi-4.1.0-6.
openmpi 4.1.0-6 fails on libfabric:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=979041
I'm
Ugh. Thanks Drew.
What are the contents of /etc/openmpi/openmpi-mca-params.conf on the node?
Does a simple hello world (see Debian/tests/hello* ) work without errors in the
environment ?
Regards
Alastair
On 15/01/2021, 08:39, "Drew Parsons" wrote:
Package: libopenmpi3
Version:
libbinutils2.35.1-7
ii libc6 2.31-9
ii libibverbs133.0-1
ii libnuma1 2.0.12-1+b1
ii librdmacm1 33.0-1
libucx0 recommends no packages.
libucx0 suggests no packages.
-- no debconf information
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,
vagrant
Best
Alastair
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Could you check that?
Best regards
Ole
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-1, so both need to migrate to testing.
Did you already engage discussions with the release team? I did not find
an unblock request.
Lucas
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building to avoid accidental collisions. We
could put Build-Conflicts: libpmix-dev into openmpi but we need to test
this.
Regards
Alastair
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Alastair McKinstry
Hi
Can you confirm that openmpi 4.1.0-9 is present on all the nodes ?
Regards
Alastair
From: Dominique Brazziel
Reply to: Dominique Brazziel , <984...@bugs.debian.org>
Date: Thursday 20 May 2021 at 13:03
To: "984...@bugs.debian.org" <984...@bugs.debia
386)
/usr/lib/i386-linux-gnu/openmpi/lib/libmca_common_ompio.so ->
libmca_common_ompio.so.41.29.1 (libopenmpi-dev:i386)
The corresponding libraries do not seem to be shipped in
libopenmpi3 any longer.
cheers,
Andreas
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Alastair
On 20/05/2021 16:33, Paul Gevers wrote:
Hi Alastair,
On Sun, 16 May 2021 07:25:51 +0100 Alastair McKinstry
wrote:
No, I wanted to wait and check if there were any issues before issuing
an unblock request.
ucx is not bullseye material, it doesn't comply at all with the release
policy
Ok, openmpi, redone ucx (to avoid 1.10.1~rc1 ) uploaded and unblock sent.
Alastair
On 16/05/2021, 06:39, "Lucas Nussbaum" wrote:
Hi Alaitair,
Thanks a lot for fixing this.
Unfortunately, I noticed that the upload to unstable was built against
ucx 1.10.1~rc1-1, so both need
python3-paraview has just been given Conflicts: python3-vtk9, which is
a little confusing. Does it mean python3-paraview replaces
python3-vtk9? Or should not python3-paraview not be used at all?
(obviously there are other packages which use vtk via python).
For this release,
about units.
It is a new build dependency of the "yt" package. I will maintain it
within the Debian Python team. Salsa dir is
https://salsa.debian.org/python-team/packages/unyt
Best regards
Ole
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8.21 11:36, Alastair McKinstry wrote:
How does this interact with xarray, etc?
I don't know; the reason to package it is that it is a new requirement
of the "yt" package. It was first developed within yt, and then
separated. There is another attempt to use units in the "astropy&qu
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
X-Debbugs-Cc: debian-de...@lists.debian.org
* Package name: ecmwflibs
Version : 0.13.3
Upstream Author : European Centre for Medium-Range Forecasts
* URL : https://github.com/ecmwf/ecmwflibs
* License
This is a bug in python3-eccodes which now depends on ecmwflibs.
Ecmwflibs in now in the NEW queue
On 03/09/2021, 21:51, "Adrian Bunk" wrote:
Source: cfgrib
Version: 0.9.9.0-1
Severity: serious
Tags: ftbfs
https://buildd.debian.org/status/logs.php?pkg=cfgrib=0.9.9.0-1
Package: ftp.debian.org
Severity: normal
Please remove the 32-bit archs - they are no longer supported upstream
Package: ball
Version: 1.5.0+git20180813.37fc53c-6)
Severity: serious
Tags: ftbfs
Justification: 4 FTBFS
The package FTBFS :
/srv/build/glew/rebuild/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/XDRPersistenceManager.h:12:10:
fatal error: rpc/types.h: No such file or directory
12 |
The bugs on mips, mips64el were unrelated – a problem with the proj8.patch
(headers now conflicting due to proj.h in proj8 conflicting with hdf-eos5).
This was resolved in 6.6.2-9.
Remaining is a definite regression with gcc, or more correctly gfortran ;
testing with gfortran 10.2.1-6 from
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
X-Debbugs-Cc: debian-de...@lists.debian.org
* Package name: findlibs
Version : 0.0.2
Upstream Author : ECMWF (The European Centre for Medium-Range Weather
Forecasts)
* URL : https://github.com/ecmwf/findlibs
Package: openscad
Version: 2021.01-1)
Severity: serious
Tags: ftbfs
openscad now FTBFS:
g++ -c -pipe -DSTACKSIZE=8388608 -fno-strict-aliasing -g -O2
-ffile-prefix-map=/build/openscad-2021.01=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
X-Debbugs-Cc: debian-de...@lists.debian.org
This transition is triggered by an SONAME change upstream.
It does not appear to have any API transition though, and seems to cause no
I've updated fdb, odc, metkit and fckit to also remove 32-bit packages
(metview was already 64-bit only)
Alastair
On 10/10/2021 09:08, Sebastiaan Couwenberg wrote:
On Fri, 03 Sep 2021 20:50:51 +0100 Alastair McKinstry wrote:
Please remove the 32-bit archs - they are no longer supported
Package: ftp.debian.org
Severity: normal
Dependency eckit no longer supports 32-bit archs
Package: ftp.debian.org
Severity: normal
fckit is a Fortran wrapper for a package eckit that no longer supports 32-bit
archs.
The latest build no longer tries to build on 32-bit archs, but existing
binaries remain.
Package: ftp.debian.org
Severity: normal
Dependency eckit no longer supports 32-bit archs
On 13/10/2021 16:25, Sebastiaan Couwenberg wrote:
On 10/13/21 5:15 PM, Alastair McKinstry wrote:
I've updated fdb, odc, metkit and fckit to also remove 32-bit packages
That doesn't not get the old binary packages removed from the archive,
RM bugreports for those will be required too.
Kind
Package: ftp.debian.org
Severity: normal
Dependency eckit no longer supports 32-bit archs
0-1)OK
Please go ahead
Cheers
Kind Regards,
Bas
--
Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie,
phone: 087-6847928
Green Party Councillor, Galway County Council
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
X-Debbugs-Cc: debian-de...@lists.debian.org
* Package name: cylc-flow
Version : 8.0
Upstream Author : NIWA
* URL : http://cylc.github.io/cylc
* License : GPL-3
Programming Lang: Python
Description
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry
X-Debbugs-Cc: debian-de...@lists.debian.org
* Package name: pyodc
Version : 1.1.0
Upstream Author : European Centre for Medium-range Forecasts (ECMWF)
* URL : https://github.com/ecmwf/pyodc
* License
Package: pymol
Severity: normal
As part of the glew transition, libglew1.5-dev is going away, while building
against libglew-dev works.
Please update the build-depends accordingly.
Thanks
Alastair
-- System Information:
Debian Release: 11.0
APT prefers stable-security
APT policy: (500,
Package: phlipple
Severity: normal
As part of the glew transition, libglew1.5-dev is going away, while building
against libglew-dev works.
Please update the build-depends accordingly.
Thanks
Alastair
-- System Information:
Debian Release: 11.0
APT prefers stable-security
APT policy:
Package: rlvm
Severity: normal
As part of the glew transition, libglew1.5-dev is going away, while building
against libglew-dev works.
Please update the build-depends accordingly.
Thanks
Alastair
-- System Information:
Debian Release: 11.0
APT prefers stable-security
APT policy: (500,
Package: info-beamer
Followup-For: Bug #995662
As part of the glew transition, libglew1.5-dev is going away, while building
against libglew-dev works.
Please update the build-depends accordingly.
Thanks
Alastair
-- System Information:
Debian Release: 11.0
APT prefers stable-security
APT
ng directory '/build/slop-7.5/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:114: CMakeFiles/slopy.dir/all] Error 2
make[2]: Leaving directory '/build/slop-7.5/obj-x86_64-linux-gnu'
Best regards
Alastair McKinstry
-- System Information:
Debian Release: 11.0
APT prefers master
APT p
Package: vice
Version: 3.5.0.dfsg-3
Severity: serious
Tags: ftbfs
Justification: ftbfs
checking for png.h... yes
checking for png_sig_cmp in -lpng... yes
checking for jpeglib.h... no
configure: error: JPEG support is missing
make[1]: *** [debian/rules:18: override_dh_auto_configure] Error 1
Package: ftp.debian.org
Severity: normal
This package (cylc) is being split upstream into two source packages -
cylc-flow and cylc-ui.
The original cylc is now replaced by cylc-flow, now present in unstable/testing.
Please remove the cylc source package and binaries
Hi Nilesh
A build is in the NEW queue to fix this,
Regards
Alastair
From: Nilesh Patra
Reply to: Nilesh Patra , <997...@bugs.debian.org>
Date: Tuesday 2 November 2021 at 09:48
To: Alastair McKinstry
Cc: <997...@bugs.debian.org>
Subject: Bug#997796: unicode-data: M
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: transition
X-Debbugs-Cc: debian-scie...@lists.debian.org
Hi dear release team,
I request permission to undetake the netcdf-parallel transition.
netcdf-parallell is the parallel build(s) of
Hi
Investigating locally this fails because numpy does not yet support python3.10.
Some form of tracking is needed as I think multiple packages are in this
situation, and the ben tracker in transitions.debian.org is incomplete.
Regards
Alastair
On 06/11/2021, 08:36,
Hi Nilesh
Just uploaded a patched csh now.
Apologies I was trying to port a later snapshot of csh but ran into porting
issues.
Regards
Alastair
From: Nilesh Patra
Date: Monday 25 October 2021 at 11:17
To: <996...@bugs.debian.org>
Cc: Alastair McKinstry
Subject: Re: csh:
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