ally that zmat tries to compile a file with -msse2,
which of course is only available on amd64 and i386.
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arise.
Thanks,
Ben file:
title = "octave-9";
is_affected = .depends ~ "octave-abi-58" | .depends ~ "octave-abi-59";
is_good = .depends ~ "octave-abi-59";
is_bad = .depends ~ "octave-abi-58";
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://lists.debian.org/msgid-search/4311acc16afb473599c79bd5b17a8b734c2f8d2b.ca...@debian.org
This bug is actually more about BLAS/LAPACK in general than about a
specific implementation (ATLAS). I’m therefore changing the title
accordingly.
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⢿⡄
.
Thanks for the suggested fix.
Note that atlas is obsolete scheduled for removal before trixie, see
the thread at:
https://lists.debian.org/msgid-search/4311acc16afb473599c79bd5b17a8b734c2f8d2b.ca...@debian.org
So I may fix this issue, but I’d rather have atlas removed sooner. The
remaining blockers are there:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=atlas-rm;users=debian-scie...@lists.debian.org
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age: https://matlab-emacs.sourceforge.net/
Git repository:
https://sourceforge.net/p/matlab-emacs/src/ci/master/tree/
It will be maintained under the umbrella of the Debian Emacsen team.
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ograms
> depend on it)
Have you tried replacing libopenblas0-pthread by libopenblas0-serial?
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ended use of the --link-
stand-alone option, and about the proper way of dealing with dynamic
loading of private Octave libraries in that case.
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his regression is blocking the migration of suitesparse to
> testing [1]. Due to the nature of this issue, I filed this bug report
> against both packages. Can you please investigate the situation and
> reassign the bug to the right package?
Thanks. This is due to a ABI break in suit
pped
> > [inst/csaps_sel.m]
> > > > > > > /<>/inst/csaps_sel.m
> > * shared x,y,ret,p,sigma2,unc_y
> > x = [0:0.01:1]'; y = sin(x);
> > [ret,p,sigma2,unc_y] = csaps_sel(x,y,x);
> > malloc(): invalid size (unsorted)
> > fatal: caught signal Aborted -- stopping myself...
> > Aborted
> > make: *** [debian/rules:5: binary] Error 134
Thanks. This is a consequence of the ABI break in libcholmod5. Tagging
accordingly.
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2.22045e-16) [42m OK [0m
> > run test_interp_regular: (max difference=2.22045e-16) [42m OK [0m
> > run test_sparse_diff: (max difference=0) [42m OK [0m
> > run test_1dvar: malloc(): invalid size (unsorted)
> > fatal: caught signal Aborted -- stopping myself...
> > Aborted
> > make: *** [debian/rules:5: binary] Error 134
Thanks. This is a consequence of the ABI break in libcholmod5. Tagging
accordingly.
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uspecting an ABI break in suitesparse, after having
noticed unexpected autopkgtest failures.
Thanks for investigating and finding the cause of the problem, you
saved me a lot of time!
I’ll report this upstream and fix it properly in Debian.
Best wishes,
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ct results at runtime.
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might still want to fix this.
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/packages/rdiff-backup/-/merge_requests/3
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Control: reassign -1 libsuitesparse-dev 1:7.4.0+dfsg-2
Control: affects -1 src:mrpt
Le lundi 08 janvier 2024 à 11:14 +0200, Adrian Bunk a écrit :
> Source: mrpt
> Version: 1:2.11.3+ds-1
> Severity: serious
> Tags: ftbfs
> X-Debbugs-Cc: Debian Science Team
> , Sébastien Vill
> Already added the replacement libopenblas-dev
>
>
> (this message was generated automatically)
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Le vendredi 15 décembre 2023 à 08:09 +0100, Sébastien Villemot a
écrit :
> Control: reopen -1
>
> Le vendredi 15 décembre 2023 à 00:27 +, Debian Bug Tracking System
> a écrit :
> > This is an automatic notification regarding your Bug report
> > which was filed aga
alternative.
Best,
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o remove ATLAS. I opened a merge
request that seems to do the job:
https://salsa.debian.org/med-team/phast/-/merge_requests/1
Best,
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Control: tags -1 + patch
Hi Andreas,
Le mercredi 29 novembre 2023 à 10:06 +0100, Andreas Tille a écrit :
> Control: tags -1 help
>
> Am Fri, Jul 14, 2023 at 01:40:22AM +0200 schrieb Sébastien Villemot:
> > Le lundi 10 juillet 2023 à 22:01 +0200, Andreas Tille a écrit :
> &
st one being actually used. I will try
> another approach, probably by changing the dh_octave_check script, which
> is the one that eventually needs a writable $HOME directory.
Note that within the context of a shell script, the following ensures
that the directory is automatically dele
nd scheduled for
> removal
>
> It has been closed by Debian FTP Masters
> (reply to Diane Trout ).
I’m reopening this bug.
The build dependency on libatlas-base-dev is still there in version
0.3.1+dfsg-1.
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Le vendredi 17 novembre 2023 à 07:43 +0100, Sebastian Ramacher a
écrit :
> On 2023-11-08 18:00:20 +0100, Sébastien Villemot wrote:
> > Package: release.debian.org
> > Severity: normal
> > User: release.debian@packages.debian.org
> > Usertags: transition
> >
s libcblas (which is currently only provided
by libatlas-base-dev), then the solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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⣾⠁⢠⠒⠀
ently only provided
by libatlas-base-dev), then the solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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e solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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es libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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s-base-dev), then the solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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ild system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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ild system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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ather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
--
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system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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es libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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es libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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to LAPACKE is too complicated, then I guess an easy solution is to
embed clapack.h into src:emmax.
Thanks for your work,
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atlas-base-dev), then the solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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y provided
by libatlas-base-dev), then the solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).
Thanks for your work,
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⢿⡄⠘⠷
e binNMU number may theoretically differ across
architectures; and such a version number may not even make sense for
our derivatives.
Any advice is welcome.
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in
experimental.
One the shared libraries got a SOVERSION bump (libcholmod4 → libcholmod5). The
ABI change is minor and I’m therefore fairly confident that there won’t be any
issue.
Thanks for your work,
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ble that octave-image builds against an old
version of octave-dev that was not affected by the bug.
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Le mercredi 27 septembre 2023 à 19:09 +0200, Sebastian Ramacher a
écrit :
> On 2023-09-26 22:59:30 +0200, Sébastien Villemot wrote:
> > Package: release.debian.org
> > Severity: normal
> > User: release.debian@packages.debian.org
> > Usertags: transition
.
Cheers,
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So something specific to your installation is causing the problem, but
I don’t know what.
At the very least, what strikes me is that the directory
/usr/share/emacs/site-lisp/elpa/ess-18.10.2/ should not exist. It looks
like a remnant of an old ESS version that did not get purged on
upgrade, f
/HDFGroup/hdf5/develop/examples/h5_write.c
² See for example https://people.freedesktop.org/~dbn/pkg-config-guide.html
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LaTeX source to PDF.
Experienced with sphinx-build 5.3.0-7.
Cheers,
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ns
the current (and possibly future) conventions for distributing ILP64
builds.
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Le mardi 05 septembre 2023 à 21:02 -0300, Antonio Terceiro a écrit :
> yes. I just submitted a stable update bug about it (#1051302)
This is great, thanks!
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t --full opendmarc’)?
> If this doesn’t work can you try also removing the setting
>
> NoNewPrivileges=yes
>
> Please let us know what works, thank you.
I’ve removed both settings and it still does not work.
Thanks,
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⣾⠁⢠⠒⠀⣿⡁ Debian Developer
⢿⡄⠘⠷⠚⠋⠀
Le jeudi 31 août 2023 à 15:12 +0200, Rafael Laboissière a écrit :
> * Rafael Laboissière [2023-08-31 15:01]:
>
> > * Sébastien Villemot [2023-08-31 12:05]:
> >
> > > Le jeudi 03 août 2023 à 08:33 +0200, Rafael Laboissière a écrit :
> > > >
> > &
nks for swiftly fixing this issue!
Shouldn’t the fix be backported to bookworm?
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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ic axis ignored
> 308s ! test failed
> 308s set: "cameratarget" must be finite
> 308s shared variables visibility_setting = on
> 308s 1 test, 0 passed, 0 known failure, 0 skipped
>
> We have seen this problem already elsewhere. I will try to investigate
> it.
Did you get to a conclusion?
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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Le mercredi 30 août 2023 à 16:05 +0200, Sébastien Villemot a écrit :
> In jekyll 4.3.1+dfsg-1, a Debian-specific patch was added to rely on Psych
> instead of safe_yaml for reading YAML files (see #1026427).
>
> This change has however broken support for YAML aliases.
[…]
&
(which must be
applied on top of 0016-Drop-usage-of-safe_yaml.patch).
Thanks for your work,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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--- /usr/share/rubygems-integration/all/gems/jekyll-4.3.1/lib/jekyll/utils.rb
sue tracker myself?
>
> Francois
>
> On 2023-08-22 at 12:35:24, Sébastien Villemot (sebast...@debian.org) wrote:
> > Package: workrave-gnome
> > Version: 1.10.51.1-2
> > Severity: normal
> >
> > Dear Maintainer,
> >
> > After upgrading to g
: Typelib file for namespace 'Workrave',
version '2.0' not found
Note that this seems to be a different issue than the following upstream one:
https://github.com/rcaelers/workrave/issues/487
Thanks for your work,
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by opendmarc, and thus belong to
the same systemd unit. Because of the sandboxing, they are no longer able to
push mail to the postfix queue (since that process involves a change in
UID/GID).
Thanks for your work,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian Developer
⢿⡄⠘⠷⠚⠋⠀ https
Le lundi 07 août 2023 à 19:13 +0100, Rebecca N. Palmer a écrit :
> This does seem to have worked: the openblas build log no longer contains
> FATAL ERROR.
>
> Hence, please give back statsmodels on mips64el. (DMs aren't allowed to
> use the self-service link.)
Done.
--
⢀⣴⠾
PS64_GENERIC but not SICORTEX, but is still listed as passing.
Thanks. Forwarded upstream.
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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nd this should
be investigated.
Cheers,
¹
https://lists.debian.org/msgid-search/4311acc16afb473599c79bd5b17a8b734c2f8d2b.ca...@debian.org
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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Le dimanche 30 juillet 2023 à 15:00 +0100, Jonathan Wiltshire a écrit :
> On Mon, Jun 26, 2023 at 12:58:07PM +0200, Sébastien Villemot wrote:
> > The problem that I am trying to fix is the following: the AVX512 kernel
> > (nicknamed
> > “SkylakeX”) is miscompiled in ope
Le mardi 25 juillet 2023 à 21:37 +0100, Jonathan Wiltshire a écrit :
> On Fri, Jun 23, 2023 at 03:11:18PM +0200, Sébastien Villemot wrote:
> > [ Reason ]
> > This oldstable update fixes important bug #1037188.
> >
> > The bug is in LAPACKE (the C interface to
Le dimanche 16 juillet 2023 à 18:50 +0200, Sebastian Ramacher a écrit :
> On 2023-07-15 23:25:28 +0200, Sébastien Villemot wrote:
> > Please schedule a transition for suitesparse 7, which currently sits in
> > experimental.
>
> Please go ahead.
Thanks for driving this trans
mes first.
Thanks. FYI, suitesparse 7 has been uploaded to unstable.
Please let me know if you need help in fixing libdogleg.
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Le dimanche 16 juillet 2023 à 18:50 +0200, Sebastian Ramacher a écrit :
> On 2023-07-15 23:25:28 +0200, Sébastien Villemot wrote:
> > Package: release.debian.org
> > Severity: normal
> > User: release.debian@packages.debian.org
> > Usertags: transition
reverse dependencies (yade, dolfin, openturns, sight) currently
FTBFS for unrelated reasons. As a consequence, I could not verify that they
build correctly against suitesparse 7 (but if they don’t, I’m fairly confident
that they can be adapted).
Thanks,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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Description: Fix FTBFS against suitesparse 7
In SuiteSparse 7.1.0, CXSparse now unconditionally enables the complex number
support. In particular, cs.h now unconditonally includes
ary packages taken over by src:grammalecte. So I
don’t know if it’s the right time to implement such a change. And I
can’t guarantee that your patch will apply as-is in the new setup.
Best wishes,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian Developer
⢿⡄⠘⠷⠚⠋⠀ https://sebastien.villemot.n
Le vendredi 14 juillet 2023 à 16:59 +0200, Sébastien Villemot a écrit :
> The build process of ceres-solver does not respect the flags from
> dpkg-buildflags.
>
> More precisely, it unconditionally adds -O3. It means that the default -O2
> level is not respected. It also means
Le samedi 15 juillet 2023 à 14:39 +0200, Sébastien Villemot a écrit :
> The build process of rheolef does not respect the flags from dpkg-buildflags.
>
> More precisely, it unconditionally adds -O3. It means that the default -O2
> level is not respected. It also means that DEB_BUILD O
Le samedi 15 juillet 2023 à 14:14 +0200, Sébastien Villemot a écrit :
> The build process of python-escript does not respect the flags from
> dpkg-buildflags.
>
> For many source files, those flags are not injected. Moreover, the build
> process unconditionally adds -O3. It means t
not
work as expected (it should use -O0).
Cheers,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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level is not
respected. It also means that DEB_BUILD OPTIONS=noopt does not work as expected
(it should use -O0).
Cheers,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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disappeared
in that release. If I understand correctly, this header was a backward
compatibility layer consisting of a few macros. I guess you should either stop
using these macros, or embed a copy of cholmod_function.h from suitessparse 5.
I attach a build log.
Cheers,
--
⢀⣴⠾⠻⢶⣦⠀ Sébastien
/Debhelper/Buildsystem/cmake.pm).
Cheers,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian Developer
⢿⡄⠘⠷⠚⠋⠀ https://sebastien.villemot.name
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Le jeudi 06 juillet 2023 à 22:09 +0200, Andreas Tille a écrit :
> Am Thu, Jul 06, 2023 at 09:13:46PM +0200 schrieb Sébastien Villemot:
> > > I'm not sure so please explain in more detail. dh-r was designed to put
> > > the lowest restriction regarding the versi
g line:
https://salsa.debian.org/r-pkg-team/dh-r/-/blob/master/dh/R.pm#L272
See also the discussion in #1040001.
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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Feel free to file a bug report about this and we can discuss it there
> if you think this makes more sense.)
It comes from this line:
https://salsa.debian.org/r-pkg-team/dh-r/-/blob/master/dh/R.pm#L272
More precisely the “r-base-core (>= $rbase_version)” part, which
imposes an unnecessarily tigh
Le samedi 01 juillet 2023 à 10:15 +0200, Sebastian Ramacher a écrit :
> On 2023-06-23 10:32:52 +0200, Sébastien Villemot wrote:
> > Package: release.debian.org
> > Severity: normal
> > User: release.debian@packages.debian.org
> > Usertags: trans
ee bug #1039470
for the details).
I also confirm that Debian “Bookworm” 12 (which has recently been
released) is not affected by this bug.
Best wishes,
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request. The patch removes the
dependency of the binary package produced on the build machine specifications
(i.e. it will build correct AVX512 kernel, irrespectively of the build machine).
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patch debian stable. I will try the new debian testing and
> see whether it is also affected.
Thanks for your report.
I confirm that the bug is present in Debian “Bullseye” 11, and that it
is fixed in the recently Debian “Bookworm” 12.
I am going to fix it in bullseye (see #1038943 fo
are documented in the d/changelog
[X] I reviewed all changes and I approve them
[X] attach debdiff against the package in (old)stable
[X] the issue is verified as fixed in unstable
[ Changes ]
A quilt patch added, containing an upstream commit.
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian Developer
t;octave-abi-57" | .depends ~ "octave-abi-58";
is_good = .depends ~ "octave-abi-58";
is_bad = .depends ~ "octave-abi-57";
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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Le vendredi 16 juin 2023 à 16:42 +0200, Sébastien Villemot a écrit :
> 2. at runtime, by passing a modified specs file to the cross-compiler (more
>specifically, replacing -lmsvcrt by -lucrt in the libgcc section)
Actually I realize that this solution probably does not work very
re
. But it
would be better if there was an easier and less tricky way of achieving the
same (for example by providing different package flavours; or by providing a
specs file explictly designed for that purpose, possibly activated by the
alternatives system).
Thanks for your work,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien
release was in 2009.
It has not been migrated to the new centralized database of Octave addons
(https://gnu-octave.github.io/packages/).
Thanks,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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, the last release was in 2011.
It has not been migrated to the new centralized database of Octave addons
(https://gnu-octave.github.io/packages/).
Thanks,
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-functions.
It is dead upstream, the last release was in 2009.
It has not been migrated to the new centralized database of Octave addons
(https://gnu-octave.github.io/packages/).
Thanks,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
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that were removed
between 4.0 and 5.0.
Unfortunately this probably means that fixing the present bug requires
more work than just patching the build system (i.e. Scilab upstream
needs to move to a more recent Slicot).
Best wishes,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian
in gcc-13.
Best wishes,
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian Developer
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Le samedi 13 mai 2023 à 04:45 -0400, Michael P. Soulier a écrit :
> On 13/05/23 Sébastien Villemot said:
>
> > Indeed it looks like the recommendation to use “sbcl --script …” is
> > incorrect, since SBCL terminates after loading the file, without giving
> > access to a R
from which you could do the installation.
You should follow the other installation option given in the same
README file, which is to use (load #p"/usr/share/common-
lisp/source/quicklisp/quicklisp.lisp") in the REPL before running
(quicklisp-quickstart:install).
Best regards,
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Also note that geneweb 7 requires the “jingoo” and “markup” OCaml
libraries, which are currently not packaged in Debian.
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⢀⣴⠾⠻⢶⣦⠀ Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁ Debian Developer
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