Bug#1058768: [Debian-med-packaging] Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-22 Thread Étienne Mollier
Hi Andreas, Andreas Tille, on 2023-12-21: > I have *not* tested cyvcf2 with htslib 1.19 from experimental thus not > closing this bug. However it builds nicely with htslib 1.18 now and > thus I uploaded to close cython3-legacy related bug #1056799. You did good not closing, I quickly checked

Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-21 Thread Andreas Tille
Hi, I have *not* tested cyvcf2 with htslib 1.19 from experimental thus not closing this bug. However it builds nicely with htslib 1.18 now and thus I uploaded to close cython3-legacy related bug #1056799. Kind regards Andreas. -- http://fam-tille.de

Bug#1058768: [Debian-med-packaging] Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-16 Thread Étienne Mollier
Control: forwarded -1 https://github.com/brentp/cyvcf2/pull/290 Experimental pseudo-excuses tripped the cyvcf2 autopkgtest bug, which has its log[1] now available. Besides, upstream seems to be discussing porting effort[2] of cyvcf2 to htslib 1.19, with changes which seem to allow for mitigating

Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-15 Thread Étienne Mollier
Source: cyvcf2 Version: 0.30.22-1 Severity: important Tags: ftbfs upstream With the introduction of htslib 1.19 in experimental, cyvcf2 is experiencing test failures at package build time and autopkgtest time. The relevant part of the error looks like: cyvcf2/tests/test_reader.py