Hello,
The cause of this issue is an error in function bam_get_seq(),
or to be more precise, function's implementation for non-intel architectures.
Function bam_get_seq is used for reading data from alignment blocks
in BAM files, block by block.
In special cases, when the alignment block being
On Mon, 2014-03-31 14:06:49 +0900, Charles Plessy wrote:
staden-io-lib is going to be removed from Testing because of a RC bug
that is solved in Sid but can not migrate as long as the package still
fails to build o non-PC architectures.
My original plan was to remove staden-io-lib from
On Mon, 2014-03-31 18:03:12 +1100, Aníbal Monsalve Salazar wrote:
On Mon, 2014-03-31 14:06:49 +0900, Charles Plessy wrote:
staden-io-lib is going to be removed from Testing because of a RC bug
that is solved in Sid but can not migrate as long as the package still
fails to build o non-PC
, March 31, 2014 10:26 AM
To: Charles Plessy
Cc: 736...@bugs.debian.org; Dejan Latinovic; debian-m...@lists.debian.org
Subject: Re: Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC
architectures: FAIL: scram_mt.test
On Mon, 2014-03-31 18:03:12 +1100, Aníbal Monsalve Salazar wrote
Le Mon, Mar 31, 2014 at 06:03:12PM +1100, Aníbal Monsalve Salazar a écrit :
Do you have the upstream email address?
Hi again, and thanks to you and Dejan for your prompt answers.
You can contact James Bonfield j...@sanger.ac.uk directly, but he is also
responsive through the upstream bug
Dear Aníbal and mips-port team,
staden-io-lib is going to be removed from Testing because of a RC bug that is
solved in Sid but can not migrate as long as the package still fails to build
o non-PC architectures.
My original plan was to remove staden-io-lib from [armel armhf mips mipsel
powerpc
Le Sat, Mar 15, 2014 at 01:32:40PM +0900, Charles Plessy a écrit :
Le Mon, Mar 10, 2014 at 12:13:34AM +1100, Aníbal Monsalve Salazar a écrit :
On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
Speaking of Upstream, I see a new release, version 1.13.5. Would you
like me
Le Mon, Mar 10, 2014 at 12:13:34AM +1100, Aníbal Monsalve Salazar a écrit :
On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
Speaking of Upstream, I see a new release, version 1.13.5. Would you
like me to upload it ?
Yes, please.
Uploaded ! Sorry for the delay.
On Sat, Feb 15, 2014 at 03:26:19PM +1100, Aníbal Monsalve Salazar wrote:
retitle 736565 FTBFS on non-PC architectures: FAIL: scram_mt.test
reassign 736565 staden-io-lib 1.13.3-2
severity 736565 serious
user debian-m...@lists.debian.org
usertags 736565 + mips-port
stop
On Sat, Jan 25, 2014
On Sun, Mar 09, 2014 at 10:10:28AM +, Aníbal Monsalve Salazar wrote:
Hello Alexander and Charles,
The regression test fails because xx#minimal.full.sam has one extra line
at the end when it's compared to xx#minimal.full.bam.sam.
The extra line is:
A416 yy 4 1
Le Sun, Mar 09, 2014 at 10:10:28AM +, Aníbal Monsalve Salazar a écrit :
The regression test fails because xx#minimal.full.sam has one extra line
at the end when it's compared to xx#minimal.full.bam.sam.
The extra line is:
A416 yy 4 1 * * 0
On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
Missing a line on MIPS definitely looks like a bug. This said, it
works on amd64 (at least the test suite) and I doubt that there are
users for the staden-io-lib on MIPS. Have you tried to contact the
upstream author ?
Not
retitle 736565 FTBFS on non-PC architectures: FAIL: scram_mt.test
reassign 736565 staden-io-lib 1.13.3-2
severity 736565 serious
user debian-m...@lists.debian.org
usertags 736565 + mips-port
stop
On Sat, Jan 25, 2014 at 09:10:28AM +0900, Charles Plessy wrote:
Package: ftp.debian.org
Severity:
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