Accepted phylonium 1.2-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 04 Dec 2019 10:52:47 + Source: phylonium Binary: phylonium Architecture: source Version: 1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Fabian Klötzl Description

Accepted phylonium 1.1-1 (source amd64) into unstable, unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Wed, 06 Nov 2019 10:09:50 + Source: phylonium Binary: phylonium phylonium-dbgsym Architecture: source amd64 Version: 1.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Fabian Klötzl

Accepted libmurmurhash 1.5-1 (source amd64) into unstable, unstable

Team Changed-By: Fabian Klötzl Description: libmurmurhash-dev - libmurmurhash header files libmurmurhash2 - Portable MurmurHash Implementation Changes: libmurmurhash (1.5-1) unstable; urgency=medium . [ Michael R. Crusoe ] * Mark the binary packages as Multi-Arch: same . [ Fabian

Accepted libmurmurhash 1.3-2 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 12 Feb 2019 08:04:29 + Source: libmurmurhash Binary: libmurmurhash1 libmurmurhash-dev Architecture: source Version: 1.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Fabian

Accepted libmurmurhash 1.3-1 (source) into unstable

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 11 Feb 2019 13:15:45 + Source: libmurmurhash Binary: libmurmurhash1 libmurmurhash-dev Architecture: source Version: 1.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Fabian

Accepted libmurmurhash 1.1-1 (source amd64) into unstable, unstable

-By: Fabian Klötzl Description: libmurmurhash-dev - libmurmurhash header files libmurmurhash1 - Portable MurmurHash Implementation Closes: 921353 Changes: libmurmurhash (1.1-1) unstable; urgency=medium . * Initial release (Closes: #921353) Checksums-Sha1: f1c73edc30989bafbd613b67228da43bf7fa77b3

Accepted andi 0.12-3 (source) into unstable

hanged-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.12-3) unstable; urgency=medium . * Allow for parallelisation of unit tests. Really fixes build failures. Checksums-Sha1: 6615e2a75ba879e78aebafa759a9

Accepted andi 0.12-2 (source) into unstable

hanged-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.12-2) unstable; urgency=medium . [ Fabian Klötzl ] * Derandomize unit tests. Fixes build failures. . [ Andreas Tille ] * Standards-Ve

Accepted andi 0.12-1 (source amd64) into unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.12-1) unstable; urgency=medium . * Team upload. . [ Fabian Klötzl ] * Remove useless dh-autoreconf build dependency * Import new upst

Accepted figtree 1.4.3+dfsg-5 (source) into unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: figtree- graphical phylogenetic tree viewer Changes: figtree (1.4.3+dfsg-5) unstable; urgency=medium . * Team upload . [ Fabian Klötzl ] * Remove mention of GIF from -help and manpage * Rewrite manpag

Accepted progressivemauve 1.2.0+4713+dfsg-1 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: progressivemauve - multiple genome alignment algorithms Closes: 887632 Changes: progressivemauve (1.2.0+4713+dfsg-1) unstable; urgency=medium . * Team upload. . [ Fabian Klötzl ] *

Accepted opensurgsim 0.7.0-6 (source) into unstable

<debian-med-packag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: libopensurgsim - Free platform for surgical simulation - runtime libopensurgsim-dev - Free platform for surgical simulation - development opensurgsim-doc - Free platform

Accepted tophat 2.1.1+dfsg1-1 (source) into unstable

org> Changed-By: Fabian Klötzl <fab...@kloetzl.info> Description: tophat - fast splice junction mapper for RNA-Seq reads Closes: 780816 Changes: tophat (2.1.1+dfsg1-1) unstable; urgency=medium . * Team upload . * debian/upstream/metadata: - Added references t

Accepted artemis 16.0.17+dfsg-3 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: artemis- genome browser and annotation tool Closes: 879384 Changes: artemis (16.0.17+dfsg-3) unstable; urgency=medium . * Team upload . [ Steffen Moeller ] * debian/upstream/metadata: - RRID

Accepted figtree 1.4.3+dfsg-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: figtree- graphical phylogenetic tree viewer Closes: 879252 Changes: figtree (1.4.3+dfsg-2) unstable; urgency=medium . * Team upload . [ Fabian Klötzl ] * fixed my own mail address. ☺ * added patc

Accepted cgview 0.0.20100111-3 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: cgview - Circular Genome Viewer Closes: 879487 Changes: cgview (0.0.20100111-3) unstable; urgency=medium . * Team upload . [ Fabian Klötzl ] * add batik-all.jar to classpath (Closes: #879487) *

Accepted cwltool 1.0.20170810192106-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: cwltool- Common workflow language reference implementation Closes: 868614 874355 Changes: cwltool (1.0.20170810192106-2) unstable; urgency=medium . * Team upload . [ Andreas Tille ] * d/upstr

Accepted arb 6.0.6-2 (source all amd64) into unstable

med-packag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <fab...@kloetzl.info> Description: arb- phylogenetic sequence analysis suite - main program arb-common - phylogenetic sequence analysis suite - common files arb-doc- phylogenetic sequence analysis suite - d

Accepted edflib 1.12-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: libedf-dev - European Data Format library - devel libedf1- European Data Format library - libs Changes: edflib (1.12-2) unstable; urgency=medium . * Team upload. * add patch to fix hurd build failu

Accepted edflib 1.12-1 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: libedf-dev - European Data Format library - devel libedf1- European Data Format library - libs Changes: edflib (1.12-1) unstable; urgency=medium . * Team upload. . [ Mathieu Malaterre ] * Remo

Accepted figtree 1.4.3+dfsg-1 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@eviobio.mpg.de> Description: figtree- graphical phylogenetic tree viewer Changes: figtree (1.4.3+dfsg-1) unstable; urgency=medium . * Team upload. . [ Fabian Klötzl ] * Adapt d/watch and d/copyright for new upstream release

Accepted andi 0.11-1 (source amd64) into unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.11-1) unstable; urgency=medium . [ Andreas Tille ] * Normalise Vcs-Browser * debhelper 10 * Standards-Version: 4.0.0 (no ch

Accepted trimmomatic 0.36+dfsg-2 (source all) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: trimmomatic - flexible read trimming tool for Illumina NGS data Closes: 867535 Changes: trimmomatic (0.36+dfsg-2) unstable; urgency=medium . * Team upload. . [ Fabian Klötzl ] * allow filenames to co

Accepted andi 0.10-2 (source amd64) into unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.10-2) unstable; urgency=medium . * Add EDAM file Checksums-Sha1: 39e2e5f600e6c19771aa3d812a98ff5eda3c64cf 1944 and

Accepted spaced 1.0.2+dfsg-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: spaced - alignment-free sequence comparison using spaced words Closes: 815672 Changes: spaced (1.0.2+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #815672) * Remove the precompiled binary

Accepted transtermhp 2.09-3 (source) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: transtermhp - find rho-independent transcription terminators in bacterial genom Closes: 811614 Changes: transtermhp (2.09-3) unstable; urgency=medium . [ James McCoy] * Move debian/upstream to debian/upstr

Accepted indelible 1.03-2 (source amd64) into unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: indelible - powerful and flexible simulator of biological evolution Changes: indelible (1.03-2) unstable; urgency=medium . * Added man page * Improved patches * Added EDAM file Ch

Accepted indelible 1.03-1 (source amd64) into unstable, unstable

kag...@lists.alioth.debian.org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: indelible - powerful and flexible simulator of biological evolution Closes: 807486 Changes: indelible (1.03-1) unstable; urgency=medium . * Initial release. (Closes: #807486) * Use Autotools for the buil

Accepted andi 0.9.6.1-1 (source amd64) into unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.9.6.1-1) unstable; urgency=medium . * Imported new upstream release * Activated unit tests Checksums-Sha1: 0c74a6e5ddbc1f1eb8b988c38267

Accepted andi 0.9.5-1 (source amd64) into unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.9.5-1) unstable; urgency=medium . * Imported new upstream release * Added GSL dependency * Flagged the PDF manual as binary Ch

Bug#807486: ITP: INDELible -- A powerful and flexible simulator of biological evolution

Package: wnpp Severity: wishlist Owner: "Debian Med Team" * Package name: INDELible Version : 1.03 Upstream Author : William Fletcher * URL : http://abacus.gene.ucl.ac.uk/software/indelible/ * License : GPL Programming Lang: C++

Accepted andi 0.9.4.1-1 (source i386) into unstable, unstable

org> Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de> Description: andi - Efficient Estimation of Evolutionary Distances Closes: 800932 Changes: andi (0.9.4.1-1) unstable; urgency=medium . * Initial release (Closes: #800932) Checksums-Sha1: 466c72250d2f4e8e3c1d3604c9c2e25fc

Bug#800932: ITP: andi -- Efficient Estimation of Evolutionary Distances

Package: wnpp Severity: wishlist Owner: "Fabian Klötzl" <kloe...@evolbio.mpg.de> * Package name: andi Version : 0.9.4 Upstream Author : Fabian Klötzl <kloe...@evolbio.mpg.de> * URL : https://github.com/EvolBioInf/andi * License : GPL

Accepted libdivsufsort 2.0.1-2 (source amd64) into unstable

-packag...@lists.alioth.debian.org Changed-By: Fabian Klötzl kloe...@evolbio.mpg.de Description: libdivsufsort-dev - libdivsufsort header files libdivsufsort3 - fast suffix array construction Closes: 794729 Changes: libdivsufsort (2.0.1-2) unstable; urgency=medium . * Changed section from science

Accepted libdivsufsort 2.0.1-1 (source all amd64) into unstable, unstable

-packag...@lists.alioth.debian.org Changed-By: Fabian Klötzl kloe...@evolbio.mpg.de Description: libdivsufsort-dev - libdivsufsort header files libdivsufsort3 - fast suffix array construction Closes: 752825 Changes: libdivsufsort (2.0.1-1) unstable; urgency=low . * Initial release (Closes