[RFS] python-dnaio

2020-11-07 Thread Nilesh Patra
gbp clone --pristine-tar https://salsa.debian.org/med-team/python-dnaio OR dcut dm --uid npatra...@gmail.com --allow python-dnaio Thanks and Regards Nilesh

Re: request for auto-build for vienna-rna

2020-11-07 Thread Philipp Kern
Hi, On 06.11.20 08:52, olivier sallou wrote: > could you please allow the package vienna-rna, in non-free, for autobuild. > d/control has already field  XS-Autobuild set. > > License is compliant for autobuild as all license restrictions are > related to free usage/redistribution of the

Re: hts-nim-tools ready for peer review

2020-11-07 Thread Nilesh Patra
Hi On Sun, 8 Nov 2020 at 01:41, Steffen Möller wrote: > https://salsa.debian.org/med-team/hts-nim-tools > > Hello, > > It is one fat binary that acts as both a container and a wrapper of all > the other executables. This should help avoid name conflicts and we can > still patch bcbio should

hts-nim-tools ready for peer review

2020-11-07 Thread Steffen Möller
https://salsa.debian.org/med-team/hts-nim-tools Hello, It is one fat binary that acts as both a container and a wrapper of all the other executables. This should help avoid name conflicts and we can still patch bcbio should this turn out to be required. It is also how upstream wants it to be

Re: Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-07 Thread Steffen Möller
On 06.11.20 23:20, Diane Trout wrote: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you. ;-) >> >>

Re: Planning a Debian Med Covid-19 project

2020-11-07 Thread Steffen Möller
That is the Virus-side of the disease. Also nice. On 07.11.20 11:44, Michael Crusoe wrote: > I would recommend getting as many components of > http://covid19.genenetwork.org/ > packaged for Debian as possible. > > Workflows are at >

Re: Planning a Debian Med Covid-19 project

2020-11-07 Thread Michael Crusoe
I would recommend getting as many components of http://covid19.genenetwork.org/ packaged for Debian as possible. Workflows are at https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate Maybe someone can start by identifying the software used and seeing which is already

Re: Planning a Debian Med Covid-19 project

2020-11-07 Thread Nilesh Patra
On Sat, 7 Nov, 2020, 2:51 am Andreas Tille, wrote: > Hi Steffen, > > On Fri, Nov 06, 2020 at 05:50:14PM +0100, Steffen Möller wrote: > > > > How do you feel about this? Should we prepare a Virtual Sprint for it? > > Sorry to somehow steal your thread. I personally have no knowledge to > answer

Leaving the Project

2020-11-07 Thread Andrei Rozanski
Dear all, It is time for me to follow a different path. Many thanks to Andreas for taking the time and for the MoM. Although rather short term interaction with you, I have been able to understand a bit more on why debian is so amazing. Thanks for your effort and for making the life of those