Re: Urgent: Spades Update before freeze

Andreas Tille kirjoitti 26.2.2021 klo 17.14: Hi, there was an answer to the opened issue here: https://github.com/ablab/spades/issues/671#issuecomment-786692020 I'm not really sure how this relates to the problem Juhani has described and unfortunately I'm currently lacking the time to

Re: Urgent: Spades Update before freeze

Hi all, For context: The spades problems are because of non-dfsg ConvertUTF.cpp (and .h) coming from a local fork of LLVM. Lintian reports an error for that[1], so we would want to get the ConvertUTF.cpp removed from the package. Andreas Tille kirjoitti 18.1.2021 klo 19.42: Hi, thanks to a

Differences in salsa access (was: Help with autopkgtest for Seqsero and python-loompy)

Hi, Nilesh Patra kirjoitti 23.2.2021 klo 19.39: > Hi, > > On Tue, 23 Feb 2021 at 22:25, Shruti Sridhar > wrote: > [...] I couldn't push my changes because it is on a protected branch so I > have made a fork

bedops FTBFS on mipsel (was: Bug#982965: bedops: reduce Build-Depends)

Hi, Some builds of bedops are being stopped for 'inactivity' or running out of memory.[1] I pushed a few commits into a branch "buildflags".[2] They turn a "make -j8" to whatever -jX the build admins have set, as well as do the compilation with -O2 rather than -O3. Consider merging the changes

Re: Building roadrunner from your salsa branch

Hi, Andreas Tille kirjoitti 16.2.2021 klo 16.20: On Tue, Feb 16, 2021 at 01:06:07PM +, Balbir Thomas wrote: Thank you for packaging libroadrunner. It is actually only an *attempt* to package that library (which I updated in Git[1] now). [1]

Re: Bug in jmalloc2 prevents migration of drmaa and thus biomaj3

Andreas Tille kirjoitti 12.2.2021 klo 11.09: > I'd like to draw your attention to bug #951704 which finally > prevents the migration of biomaj3[1]. As the soft freeze has begun, drmaa will not be allowed to re-enter testing. We could remove the python3-drmaa dependency relationship from

Re: bioawk - may I ask for a review?

Nilesh Patra kirjoitti 11.2.2021 klo 19.38: > Since soft freeze begins in just a few hours, should I upload this targeting > unstable or experimental? > I suppose unstable should be OK. But I'm not very well aware of what might be > fine. So I need a confirmation here. I think Andreas confirmed

Re: hyphy - amd64 Test failures

Hi Nilesh and Michael, On Sat, 30 Jan 2021, 23.24 Nilesh Patra wrote: > Hi Michael, > > Thanks for your work on hyphy. > It seems that with your last upload, CI tests are failing on amd64, but > working everywhere else, as can be seen on tracker here[1] > > The log for amd64 on debci[2] seems

Bug#980765: eigensoft: absolute path to fixgreen in /usr/bin/ploteig

lso mark the bug fixed in a certain version because it looks like the ploteig script disappeared at that point. Even on Ubuntu, the reportbug package is supposed to work, sorry to hear if does not. The command to use would be "reportbug -B debian eigensoft". -- Juhani Numminen

Re: bedtools 2.29.2+dfsg-6

Étienne Mollier kirjoitti 17.1.2021 klo 14.20: > Hi, > > I noticed current bedtools 2.29.2+dfsg-5 fails to migrate to > testing, so I pushed a fix[1]. Since this is transition freeze, > I'm not 100% sure if it should be pushed, current Testing > version is 2.29.2+dfsg-3, and there are a few

Re: ready for upload: librcsb-core-wrapper: ftbfs with GCC-10

Hi, about this package again, Andreas Tille kirjoitti 15.1.2021 klo 12.27: > Thanks again for your very welcome help. The package is currently building on > my machine and will be uploaded soon. I prepared another upload to fix debci failures[1] and added a new patch to enable the upgrade to

Re: Urgent: Spades Update before freeze

Hi, Andreas Tille kirjoitti 15.1.2021 klo 12.47: > Hi folks, > > I think we should urgently upgrade spades before the freeze. I've > commited the latest upstream version to Git but it has Build-Issues: > > ... > I think its just a matter of proper linking, Could someone > please have a

ready for upload: librcsb-core-wrapper: ftbfs with GCC-10

On Fri, 17 Apr 2020 11:04:53 + Matthias Klose wrote: > Package: src:librcsb-core-wrapper > Version: 1.005-8 > Severity: normal > Tags: sid bullseye > User: debian-...@lists.debian.org > Usertags: ftbfs-gcc-10 ... > > Making etc

Re: [RFS] parallel-fastq-dump

Andreas Tille kirjoitti 9.1.2021 klo 17.22: > Hi Juhani, > > On Sat, Jan 09, 2021 at 11:46:41AM +0200, Juhani Numminen wrote: >> The package parallel-fastq is not currently migrating to testing because >> it is architecture-independent ("arch:all") but only installa

[RFS] parallel-fastq-dump

Hello, The package parallel-fastq is not currently migrating to testing because it is architecture-independent ("arch:all") but only installable on amd64. I have a patch that should rectify the situation. https://salsa.debian.org/med-team/parallel-fastq-dump/-/merge_requests/1 Regards, Juhani

libgo-perl needs a source-only upload

Dear DDs of this mailing list, and allowed DM uploaders for this package, libgo-perl would need a new source-only upload (possibly without changes even) to migrate from sid to bullseye. https://tracker.debian.org/pkg/libgo-perl Regards, Juhani

Re: Help needed for #871234 FTBFS with GCC-7: error: type/value mismatch

Hi Alex! Alex Mestiashvili kirjoitti 05.09.2017 klo 14:55: parameter list for 'template struct std::hash' while (pos I think the problem is we don't want std::hash but GHash::hash and GHash::GHashEntry::hash. (Sorry, I haven't looked deeper into how to get the correct 'hash'.) Cheers,