Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix’ redeclared as different kind of entity]

2021-12-22 Thread Julien Lamy
Hi, Le 22/12/2021 à 11:11, Andreas Tille a écrit : Hi Yaroslav (and others) I had a quick look at this bug but no real idea. I just fixed d/watch in Git but I need to hand over this issue to someone more competent than me. Another one with a patch from upstream [1,2], backported to Salsa.

Re: MRtrix3

2021-03-04 Thread Julien Lamy
Le 03/03/2021 à 20:13, Andreas Tille a écrit : On Wed, Mar 03, 2021 at 04:45:02PM +0100, Julien Lamy wrote: Would the following solution be acceptable per Debian policy: - Keep dirsplit and its dependency gen_scheme installed in usr/lib/mrtrix3/bin (current situation) - Install everything else

Re: MRtrix3

2021-03-03 Thread Julien Lamy
Le 03/03/2021 à 14:50, Julien Lamy a écrit : Hi Nilesh, Le 03/03/2021 à 13:31, Nilesh Patra a écrit : Hi On Wed, 3 Mar, 2021, 5:10 pm Julien Lamy, <mailto:l...@unistra.fr>> wrote:     All binaries are installed in /usr/lib/mrtrix3/bin. They are being symlinked to usr/bin s

Re: MRtrix3

2021-03-03 Thread Julien Lamy
Hi Nilesh, Le 03/03/2021 à 13:31, Nilesh Patra a écrit : Hi On Wed, 3 Mar, 2021, 5:10 pm Julien Lamy, <mailto:l...@unistra.fr>> wrote: All binaries are installed in /usr/lib/mrtrix3/bin. They are being symlinked to usr/bin see here[1] Is there a reason I missed or m

MRtrix3

2021-03-03 Thread Julien Lamy
Hi all, I've updated the Salsa repository for MRtrix3 so that the package now builds correctly. There are still a couple of issues : Lintian complains about unnecessary-team-upload. Is this just the matter of Andreas' entry in the changelog? All binaries are installed in

[RFS] Odil 0.12.1-1

2021-01-13 Thread Julien Lamy
Hi all, I've updated Odil to the latest upstream version. Could I get a review (https://salsa.debian.org/med-team/odil) and, if everything looks good, an upload? Cheers, -- Julien

Re: Ants taken over from Neurodebian team but it does not build - any volunteer?

2020-12-07 Thread Julien Lamy
Le 07/12/2020 à 18:18, Yaroslav Halchenko a écrit : On Mon, 07 Dec 2020, Andreas Tille wrote: Hi, since we take over packages in our tasks files from Neurodebian step by step I did so with ants[1] which is unmaintained since a long time[2]. I upgraded the packaging to Debian Med standards

Sponsored upload: odil 0.12.0-1

2020-04-08 Thread Julien Lamy
Dear all, I've updated the Salsa repository of Odil to the latest upstream version (0.12.0). The packages build correctly on sid, and lintian reports neither warnings nor errors. On the packaging side, I've disabled the parallel build in hope that the build failures will stop: the parallel build

Sponsored upload: odil 0.11.0-1

2020-02-20 Thread Julien Lamy
Dear all, I've updated the Salsa repository of Odil to the latest upstream version (0.11.0). The packages build correctly on sid, and lintian reports neither warnings nor errors. Could I get a sponsored upload for this? Cheers, -- Julien signature.asc Description: OpenPGP digital

Re: DCMTK #913304

2019-01-17 Thread Julien Lamy
Le 17/01/2019 à 22:14, Gregory Sharp a écrit : > > Hi, > > I have been investigating #913304 [1], which causes plastimatch tests to fail. > (Also it makes dcmdump not working in sid.) I think the problem can be > solved by: > > sed -e 's/CMAKE_INSTALL_DATADIC/DCMTK_INSTALL_DATDIC/' > > to

Sponsored upload: odil 0.10.0-3

2019-01-14 Thread Julien Lamy
Dear all, Due to the DCMTK transition, the rebuilds of odil have failed. I've uploaded a fix to the salsa repostory: could I get a sponsored upload for this? Cheers, -- Julien signature.asc Description: OpenPGP digital signature

Re: Odil : getting back into testing

2019-01-10 Thread Julien Lamy
an.org/status/package.php?p=odil > > On Fri, Jan 04, 2019 at 05:31:26PM +0100, Julien Lamy wrote: >> Hi all, >> The latest version of Odil does not build on mips64el [1] and if I'm not >> mistaken, this is the only thing preventing the package to migrate to >> tes

Odil : getting back into testing

2019-01-04 Thread Julien Lamy
Hi all, The latest version of Odil does not build on mips64el [1] and if I'm not mistaken, this is the only thing preventing the package to migrate to testing. By going through the logs, one of the unit tests times out when building [2]. Since I don't have access to a real mips64el box, I've

Re: Sponsored upload: odil 0.10.0-1

2018-11-28 Thread Julien Lamy
Hi Andreas, Le 28/11/2018 à 08:44, Andreas Tille a écrit : > Hi Julien, > > On Tue, Nov 27, 2018 at 12:47:00PM +0100, Julien Lamy wrote: >> Dear all, >> I've updated the Salsa repository of Odil to the latest upstream version >> (0.10.0), with the benefit of cl

Sponsored upload: odil 0.10.0-1

2018-11-27 Thread Julien Lamy
Dear all, I've updated the Salsa repository of Odil to the latest upstream version (0.10.0), with the benefit of closing #914144 (boost-python is not a dependency anymore). The packages build correctly on sid, and lintian reports neither warnings nor errors. Could I get a sponsored upload for

Advice needed for odil 0.10.0-1

2018-11-05 Thread Julien Lamy
Dear all, I've updated the Salsa repository for odil with the latest upstream version (0.10.0). With the current version, Lintian issues a warning (package-has-unnecessary-activation-of-ldconfig-trigger) which seems unrelated to my packaging (there is no explicit use of the ldconfig trigger): is

Sponsored upload : odil 0.9.2-1

2018-05-03 Thread Julien Lamy
Dear all, I've updated the Git repository of Odil to the latest upstream version (0.9.2). The packages build correctly on sid, and lintian shows neither warning nor errors. I think this new version could also solve the build problems on mipsel and mips64el. Could I get a sponsored upload for

Sponsored upload : odil 0.9.1-1

2018-03-02 Thread Julien Lamy
Dear all, I've updated the Git repository of Odil to the latest upstream version (0.9.1). The packages build correctly on sid, and lintian shows neither warning nor errors. Could I get a sponsored upload for this? Cheers, -- Julien signature.asc Description: OpenPGP digital signature

Re: Sponsored upload (maybe): odil 0.8.0-4

2017-10-22 Thread Julien Lamy
Hi Afif, Le 18/10/2017 à 01:57, Afif Elghraoui a écrit : > Hi, Julien, > > على الثلاثاء 17 تشرين الأول 2017 ‫05:48، كتب Julien Lamy: >> Dear all, >> I've fixed bug #878426 in the Git repository of odil (and similar >> not-yet-existing bugs for future Python tran

Sponsored upload (maybe): odil 0.8.0-4

2017-10-17 Thread Julien Lamy
Dear all, I've fixed bug #878426 in the Git repository of odil (and similar not-yet-existing bugs for future Python transitions). I was however too slow and an NMU was performed a few hours ago: what is the policy regarding the upload to unstable in this kind of case? Cheers, -- Julien

Re: Sponsored upload: odil 0.8.0-3

2017-08-22 Thread Julien Lamy
Hi Andreas, Le 22/08/2017 à 16:09, Andreas Tille a écrit : > Hi Julien, > > On Tue, Aug 22, 2017 at 11:51:28AM +0200, Julien Lamy wrote: >> Dear all, >> I believe I've fixed #871301 in the Git repo of Odil: >> * the build dep is fixed >> * I don't generate

Sponsored upload: odil 0.8.0-3

2017-08-22 Thread Julien Lamy
Dear all, I believe I've fixed #871301 in the Git repo of Odil: * the build dep is fixed * I don't generate a symbols file, but the required symbols are both present in the .so and I've added the dh_makeshlibs override I've also fixed the detection of Python version and updated the standards

Sponsored upload: odil 0.8.0-2

2017-05-09 Thread Julien Lamy
Dear all, Following the failed build of odil 0.8.0-1 (https://buildd.debian.org/status/logs.php?pkg=odil=0.8.0-1, caused by an error in arch-dependent-only build) and bug #861747 (wrong copyright attribution), I've prepared a new version in the Git repo (0.8.0-2). If everything looks OK, could I

Re: Sponsored upload: odil 0.8.0-1

2017-04-21 Thread Julien Lamy
Hi Andreas, Le 20/04/2017 à 16:33, Andreas Tille a écrit : > Hi Julien, > > thanks for your work on this. > > On Thu, Apr 20, 2017 at 01:25:52PM +0200, Julien Lamy wrote: >> Dear all, >> I've updated the Git repository of Odil to the latest upstream version >>

Sponsored upload: odil 0.8.0-1

2017-04-20 Thread Julien Lamy
Dear all, I've updated the Git repository of Odil to the latest upstream version (0.8.0). Modulo my question below, could I get a sponsored upload? This version adds (among other things) Python 3 wrappers: even though Lintian passes on both stretch and sid, could I get your advice if the way I

RFS: odil 0.7.3-1

2016-11-02 Thread Julien Lamy
Dear all, I've updated the Git repository of Odil [1] to the latest upstream version (0.7.3); on the packaging side, this release should also address the multiarch hints on the tracker. Could I get a sponsored upload for this? [1] https://anonscm.debian.org/cgit/debian-med/odil.git/ Cheers, --

RFS: odil 0.7.1-1

2016-07-12 Thread Julien Lamy
Dear all, I've updated the Git repository of Odil to the latest upstream version (0.7.1). It builds and passes lintian on my side, so if everything looks OK, could I get an upload? Cheers, -- Julien signature.asc Description: OpenPGP digital signature

Re: RFS: odil 0.7.0-1

2016-06-22 Thread Julien Lamy
Le 22/06/2016 à 11:22, Andreas Tille a écrit : > Hi Julien, > > On Tue, Jun 21, 2016 at 03:53:43PM +0200, Julien Lamy wrote: >> >> Thanks, but since all 32-bit arches failed on the same test (except for >> sh4 on which gcc segfaults and powerpcspe on which a build-de

Re: RFS: odil 0.7.0-1

2016-06-21 Thread Julien Lamy
Le 20/06/2016 à 17:44, Mattia Rizzolo a écrit : > On Mon, Jun 20, 2016 at 05:15:50PM +0200, Julien Lamy wrote: >> I've updated the git repository of Odil with the new upstream release, >> which should have the nice effect of finally fix the build >> reproducibility. Could I g

RFS: odil 0.7.0-1

2016-06-20 Thread Julien Lamy
Dear all, I've updated the git repository of Odil with the new upstream release, which should have the nice effect of finally fix the build reproducibility. Could I get a sponsored upload for this? Cheers, -- Julien signature.asc Description: OpenPGP digital signature

Re: odil now reproducible on amd64 and i386

2016-05-27 Thread Julien Lamy
Le 27/05/2016 à 10:22, Andreas Tille a écrit : > Hi Julien, > > On Fri, May 27, 2016 at 09:57:12AM +0200, Julien Lamy wrote: >> I'm pretty confident that my fix will also work on >> armhf, but is there a way to test this without an armhf machine at hand? > > I think th

odil now reproducible on amd64 and i386

2016-05-27 Thread Julien Lamy
Dear all, Since it seems to be reproducibility season, I've made odil build reproducibly on amd64 and i386 [1], following the test procedure described in [2]. I'm pretty confident that my fix will also work on armhf, but is there a way to test this without an armhf machine at hand? [1]

Re: RFS : odil 0.6.0-1

2016-05-13 Thread Julien Lamy
Le 13/05/2016 à 16:09, Mattia Rizzolo a écrit : > On Fri, May 13, 2016 at 03:55:32PM +0200, Julien Lamy wrote: >> I've committed a new release (0.6.0-1) to the git repository of Odil. It >> builds correctly in a sid chroot (both arch-dependent-only >> arch-independent-only

RFS : odil 0.6.0-1

2016-05-13 Thread Julien Lamy
Dear all, I've committed a new release (0.6.0-1) to the git repository of Odil. It builds correctly in a sid chroot (both arch-dependent-only arch-independent-only) so, unless I missed something, could I get a sponsored upload for this? Cheers, -- Julien signature.asc Description: OpenPGP

Re: Bug#822110: odil: FTBFS when built with dpkg-buildpackage -A (chrpath fails)

2016-04-22 Thread Julien Lamy
Le 22/04/2016 12:55, Mattia Rizzolo a écrit : > On Fri, Apr 22, 2016 at 12:27:17PM +0200, Julien Lamy wrote: >>> I'm going to test them out, and check if that works as expected, if not, >>> well, I'll try to have it working :) (hope you're ok with it) >> &g

Re: Bug#822110: odil: FTBFS when built with dpkg-buildpackage -A (chrpath fails)

2016-04-22 Thread Julien Lamy
Le 22/04/2016 11:55, Mattia Rizzolo a écrit : > On Fri, Apr 22, 2016 at 11:14:16AM +0200, Julien Lamy wrote: >> >> >> Le 22/04/2016 08:42, Ghislain Vaillant a écrit : >>> On 22/04/16 07:03, Julien Lamy wrote: >>>> It seems that my fix actually made thin

Re: Bug#822110: odil: FTBFS when built with dpkg-buildpackage -A (chrpath fails)

2016-04-22 Thread Julien Lamy
Le 22/04/2016 08:42, Ghislain Vaillant a écrit : > On 22/04/16 07:03, Julien Lamy wrote: >> It seems that my fix actually made things worse since the builds have >> failed for almost all architectures [1]. I think the cause is me not >> reading correctly pbuilder's man page

Re: Bug#822110: odil: FTBFS when built with dpkg-buildpackage -A (chrpath fails)

2016-04-22 Thread Julien Lamy
ick fix, Andreas. > > On Thu, Apr 21, 2016 at 04:57:13PM +0200, Julien Lamy wrote: >> Dear all, >> I've committed a fix for #822110 (FTBFS when building only >> arch-independent packages) in the git repository of Odil. Building only >> architecture-independent as

Re: Bug#822110: odil: FTBFS when built with dpkg-buildpackage -A (chrpath fails)

2016-04-21 Thread Julien Lamy
Thanks for the upload! -- Julien Le 21/04/2016 17:55, Andreas Tille a écrit : > Uploaded. Thanks for your quick fix, Andreas. > > On Thu, Apr 21, 2016 at 04:57:13PM +0200, Julien Lamy wrote: >> Dear all, >> I've committed a fix for #822110 (FTBFS when building only >>

Re: Packaging Python extensions and applications

2016-04-15 Thread Julien Lamy
Le 15/04/2016 07:37, Andreas Tille a écrit : > On Thu, Apr 14, 2016 at 04:14:08PM +0200, Julien Lamy wrote: >> >> If the package looks OK, could I ask for a sponsored upload? Thanks for the upload! > Please note my change > > diff --git a/debian/odil.postinst b/debi

Re: Packaging Python extensions and applications

2016-04-14 Thread Julien Lamy
Le 13/04/2016 18:54, Ghislain Vaillant a écrit : > On 13/04/16 17:37, Julien Lamy wrote: >> Dear all, >> While preparing the package of the new upstream release of Odil, I had a >> couple of questions regarding the packaging of Python extensions and >> applications.

Packaging Python extensions and applications

2016-04-13 Thread Julien Lamy
Dear all, While preparing the package of the new upstream release of Odil, I had a couple of questions regarding the packaging of Python extensions and applications. I've read the Debian Python Policy and the Python Style Guides on wiki.debian.org, but I'm not sure my current solution (cf.

Sponsoring request: odil

2016-03-15 Thread Julien Lamy
Dear all, I've updated the Debian Med repository with a new of Odil [1]. If this looks OK, could somebody sponsor the upload? As a side note, the tracker [2] mentions a problem while searching for a new upstream version: is this related to bug 815980 [3] or is there something wrong in my d/watch?

Re: Sponsoring request: odil

2016-03-01 Thread Julien Lamy
Le 01/03/2016 19:21, Mattia Rizzolo a écrit : > On Tue, Mar 01, 2016 at 04:10:41PM +0100, Julien Lamy wrote: >> Dear all, >> I've updated the Debian Med repository with the newest upstream version >> of Odil [1]. Could somebody sponsor the upload? >> >> [1] &

Sponsoring request: odil

2016-03-01 Thread Julien Lamy
Dear all, I've updated the Debian Med repository with the newest upstream version of Odil [1]. Could somebody sponsor the upload? [1] https://anonscm.debian.org/cgit/debian-med/odil.git/tag/?h=debian/0.4.1-1 Thanks! -- Julien <> signature.asc Description: OpenPGP digital signature

Re: Odil (previously DCMTK++) 0.4.0

2016-01-16 Thread Julien Lamy
Hi Andreas, Le 15/01/2016 16:27, Andreas Tille a écrit : > On Fri, Jan 15, 2016 at 04:06:49PM +0100, Julien Lamy wrote: >> >>> I spended a bit more time in thinking about this. IMHO it makes sense >>> to make the rename perfect by also renaming the Git reposit

Re: Odil (previously DCMTK++) 0.4.0

2016-01-16 Thread Julien Lamy
Hi Andreas, Le 16/01/2016 12:38, Andreas Tille a écrit : > OK. I also added "Replaces" fields and uploaded - please git pull. > > I also renamed the files in the pristine-tar branch (make sure you > pull all branches). Thanks a lot! If so, how is the removal of the old packages from the

Re: Odil (previously DCMTK++) 0.4.0

2016-01-15 Thread Julien Lamy
Hi Andreas, Le 15/01/2016 09:19, Andreas Tille a écrit : > On Thu, Jan 14, 2016 at 10:01:48AM +0100, Julien Lamy wrote: >> Since this release involves a renaming (from dcmtkpp to odil) from >> upstream, I've followed the method 2 (dummy packages) from the renaming >

Odil (previously DCMTK++) 0.4.0

2016-01-14 Thread Julien Lamy
Dear all, I've updated the Debian Med repository with the newest upstream version of Odil (previously DCMTK++) [1]. Since this release involves a renaming (from dcmtkpp to odil) from upstream, I've followed the method 2 (dummy packages) from the renaming doc of Debian [2]. Are the resulting

Re: Fwd: orthanc REMOVED from testing

2015-12-25 Thread Julien Lamy
Le 25/12/2015 07:52, Andreas Tille a écrit : > Hi Sébastien, > > On Thu, Dec 24, 2015 at 05:45:21PM +0100, Sébastien Jodogne wrote: >> FYI, orthanc has just been removed from testing. >> >> But, the bug that justifies its removal from testing is fixed since November >> 10th, 2015: >>

Re: Fwd: orthanc REMOVED from testing

2015-12-25 Thread Julien Lamy
Le 25/12/2015 17:23, Gert Wollny a écrit : > Hello all, > >> Since I'm in the same situation as Sébastien, I did a bit of digging: >> >> * dcmtk fails to build on m68k [1], due to a qemu error [2, look for >> "qemu: unhandled CPU exception"] > > But AFAIK, m68k is not a release arch, so should

Re: dcmtkpp 0.3.1

2015-10-09 Thread Julien Lamy
Hi Andreas, Le 08/10/2015 23:40, Andreas Tille a écrit : > Hi Julien, > > On Thu, Oct 08, 2015 at 05:22:33PM +0200, Julien Lamy wrote: >> Hello, >> I have updated dcmtk++'s repository [1] with the latest upstream >> version. This release includes new features

dcmtkpp 0.3.1

2015-10-08 Thread Julien Lamy
Hello, I have updated dcmtk++'s repository [1] with the latest upstream version. This release includes new features (native reading and writing of DICOM files and generation of DICOMDIR files) as well as bugfixes. It builds in a cowbuilder and lintian finds no error nor warning. Andreas, would

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-31 Thread Julien Lamy
Hi Andreas, Le 30/07/2015 18:34, Andreas Tille a écrit : On Thu, Jul 30, 2015 at 05:33:08PM +0200, Julien Lamy wrote: feels like the first version of the package is ready: is there anything else I should correct? Nothing. What would be the next steps? Waiting until the package

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-24 Thread Julien Lamy
Hi, Le 23/07/2015 18:20, Andreas Tille a écrit : On Thu, Jul 23, 2015 at 05:59:10PM +0200, Julien Lamy wrote: I still have to generate a documentation package: I'll try to get this done early next week… Sounds like good progress. Just let us know about any problem. I added

Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API

2015-07-24 Thread Julien Lamy
Le 24/07/2015 16:43, Steve M. Robbins a écrit : On July 23, 2015 08:44:04 PM Philip Hands wrote: Julien Lamy l...@unistra.fr writes: * Package name: dcmtkpp Version : 0.2.1 Upstream Author : Julien Lamy l...@unistra.fr * URL : https://github.com/lamyj/dcmtkpp

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-23 Thread Julien Lamy
Hi, Le 22/07/2015 21:07, Andreas Tille a écrit : Hi again, On Mon, Jul 20, 2015 at 07:03:35PM +0200, Andreas Tille wrote: I looked at d-shlibs, but I'm not sure what it is supposed to achieve : it seems to me that all files are already in place and that they do not need to be moved in the

Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API

2015-07-23 Thread Julien Lamy
Package: wnpp Severity: wishlist Owner: Debian Med team debian-med@lists.debian.org * Package name: dcmtkpp Version : 0.2.1 Upstream Author : Julien Lamy l...@unistra.fr * URL : https://github.com/lamyj/dcmtkpp * License : CeCILL-B Programming Lang: C

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-20 Thread Julien Lamy
Hi, Le 17/07/2015 20:02, Andreas Tille a écrit : Good. I have two points to mention. You used some versioned dependencies and these are not all needed since the versions in question are provided anyway at minimum. The easiest way to find this out is to use cme fix dpkg-control

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-17 Thread Julien Lamy
Le 16/07/2015 20:39, Andreas Tille a écrit : That's OK now. I guess your next commits will be a debian/ dir. Feel free to commit your latest stuff you just did and improve from there. I just pushed the first version of the debian dir, which raised a question regarding unit tests: should I

[MoM] Re: Re: Help with Debian packaging of DCMTK++

2015-07-16 Thread Julien Lamy
Hi, Le 15/07/2015 18:17, Andreas Tille a écrit : On Wed, Jul 15, 2015 at 05:36:26PM +0200, Julien Lamy wrote: Hi Andreas, Thanks for the warm welcome! We made this a tradition in the Debian Med team. And quite a nice one :-) I have added you to the project. Please make sure you follow

Re: [MoM] Re: Help with Debian packaging of DCMTK++

2015-07-16 Thread Julien Lamy
Hi Gert, Le 16/07/2015 14:37, Gert Wollny a écrit : Hi Julien, welcome from me as well. Thanks! To be clear here: Usually we use gbp import-orig --pristine-tar source_tarball Regarding this step: I've seen that your source tree does include the /debian subdirectory. It is

Help with Debian packaging of DCMTK++

2015-07-15 Thread Julien Lamy
/debian Best regards, -- Julien Lamy, Ph.D. Research engineer University of Strasbourg, ICube laboratory signature.asc Description: OpenPGP digital signature

Re: Help with Debian packaging of DCMTK++

2015-07-15 Thread Julien Lamy
Hi Andreas, Thanks for the warm welcome! Le 15/07/2015 16:22, Andreas Tille a écrit : Hi Julien, On Wed, Jul 15, 2015 at 03:27:57PM +0200, Julien Lamy wrote: Dear all, We have been developing in the past few months a DICOM library called DCMTK++ [1] that wraps the oldish API of DCMTK