Re: Sprint can start Friday evening - who would like to join

Hi all  I'll hopefully be in Berlin already around 14:00, happy to join you (for me after dinner, as I'll probably opt for an early dinner, not managing a proper lunch that day) Looking forward! Matus From: Sascha Steinbiss Sent: Tuesday, January 17, 2023

Re: Possibility of In-person sprints in 2023?

Hi everyone, Nice to read about plans for an in-person Sprint again  There is a bit of a chance I might actually be able to join. Otherwise travelling is difficult at the moment with my growing family, although I'd love to. Let's see  Something what might be of interest to Debian, is that

Re: "Entry: NA" in debian/upstream/metadata

Hey all again, and thanks for your thoughts Andrius and Andreas! On 2021-03-03 09:36, Andreas Tille wrote: Hi Andrius, On 2021-03-03 08:54, Andrius Merkys wrote: Dear Matus, On 2021-03-02 19:56, Matus Kalas wrote: I'd suggest hearing from the folks who have done the most of the work

Re: "Entry: NA" in debian/upstream/metadata

On 2021-03-02 12:48, Andrius Merkys wrote: Dear Matus, Thank you for prompt response. On 2021-03-02 13:16, Matus Kalas wrote: If I understood correctly, the idea behind NA was to mark explicitly that the tool has been searched in those registries and not found. Perhaps N/A would be an even

Re: "Entry: NA" in debian/upstream/metadata

Dear Andrius and all, If I understood correctly, the idea behind NA was to mark explicitly that the tool has been searched in those registries and not found. Perhaps N/A would be an even more obvious string, and definitely not colliding with an eventual ID. I'm curious to hear what the

Re: First day of online sprint

Hi all, And big thanks for the daily summary Andreas!! I highly appreciate the contributions of this Sprint. I'm personally too overloaded with other work at the moment :/ But if you decide on an "everyone meets" timeslot e.g. on Saturday, I'll very gladly join to say hi. A quick status

Re: Metadata exchange with the Tools Platform Ecosystem

Hello Steffen and everyone, ^^ Giant thanks for your quick and enthusiastic answer! On 2020-11-11 16:59, Steffen Möller wrote: Hello Hervé, hello Matúš, On 11.11.20 16:36, Hervé Ménager wrote: Hello Debian-ers, We (ELIXIR Tools Platform) have been working a lot on the Tools Platform lately.

Re: "Education Tab" - extended the Spreadsheet as a bit of an experiment

Sounds like an awesome idea, Steffen! Do you folks think these videos could be included in some public educational registry? Such as TeSS or something? Ideally tagged as a (curated) collection... All best, Matus On 2020-11-02 16:53, James Procter (Staff) wrote: Thanks Steffen. I'll ty

Re: When presenting Debian Med - worthwhile to point to the need to update packages as contributions?

Great points Steffen! In addition to the video tutorial(s), it might perhaps be interesting to take a look at Bionitio (https://github.com/bionitio-team/bionitio) and try to squeeze in Debian packaging into their templates. Long live Debian Med! Matus On 2020-09-30 19:49, Nilesh Patra

Re: ELIXIR & Debian(-Med)

It would indeed be awesome if Debian got recognition in ELIXIR. If impossible within ELIXIR Germany, then at the level of ELIXIR Europe, even better. Do you think Michael that the related board in ELIXIR might also recognise a major software "service" as a Core Data Service? On 2020-09-04

Re: Refs to Conda - giving it a try after meeting Björn at a conference

Hey all, it's super cool to see this happening!! I'm also very strongly supporting the idea of bioconda+debian~>biology training material(s), including the Jugend vorsicht! (Youth beware? :D) I'll be in the BioHackathon in Greater Paris as well. For the ELIXIR folks: Do you think we should

Re: DebianMed Sprint in Vilnius?

Hi all, This sounds awesome, I'm already looking forward! :-D Did you mean the Lithuania's Independence Restoration Day on Mon 2019-03-11? (the All Saints' Day is on Sat 2018-11-03) Those dates would probably be the very best option for me. In general, taking into account my intense

Re: What registry is biii?

Hi Andreas, Steffen, et al. BIII or biii (whichever you like more) is https://www.biii.eu/, the registry of software for biomage informatics. We added these couple of links with Steffen in the last Sprint. Matus On 2018-03-20 15:27, Andreas Tille wrote: Hi Steffen, the UDD importer gave

Re: debianmed sprint hosting location?

Hi Olivier, The coarse location is https://en.wikipedia.org/wiki/Barcelona_Biomedical_Research_Park, as stated in https://wiki.debian.org/Sprints/2018/DebianMed2018. I think I'll be booking something cheap either nearby, or between the venue and the inner city centre, probably via AirBNB.

Re: Date shift: Sprint moving to 10-12/2/2018, was: Debian Med Sprint 26-28/1/2018 in Barcelona

Hi all, On 2017-11-15 17:33, Steffen Möller wrote: On 15.11.17 16:00, Andreas Tille wrote: Hi, On Sat, Nov 11, 2017 at 12:24:43PM +0100, Steffen Möller wrote: Dear all, I hope there are not too many of you who have reserved fixed flights already: There is an ELIXIR meeting already scheduled

Re: Please check implementation

Hey, This is super awesome to see Andreas & Steffen, you really made my day! A few notes: * Would you please add a dot to Bio.Tools? Or Bio.tools, whichever you like more. * The coloured backgrounds don't work in Firefox, but that's no problem at all. * I really like the coloured

Re: Sprint organisation

Hey all, Sounds good with the wifi, thanks Michael! I'll be arriving only late on Saturday night, so see you on Sunday ;-) Have good trips! Matus On 2017-01-09 16:38, Michael Crusoe wrote: 2017-01-09 17:35 GMT+02:00 Olivier Sallou : On 01/09/2017 11:34 AM, Michael

Re: Next sprint

Hello all, Thank you very much Michael for organising this! We've had some discussions previously about organising a second issue of the Tools|Workflows|Workbenches hackathon, and eventually co-locating it with the Debian Med Sprint. Or should we do that separately in a more accessible

Re: Request for increased awareness: Open Source FPGA acceleration

Sounds really epic! I'm looking forward to check it out properly. Long live FPGAs! (Btw, aren't there any interesting news also about NoCs?) Matus On 2016-09-02 10:18, Steffen Möller wrote: Hi all, Those who participated in our past Sprint in Lyngby have met Ruben. He is the one who kindly

Re: Brainstorming about Debian Med paper, motivated by Nat Rev Gen paper "Crowdsourcing biomedical research" citing our Sprint paper

Hello Steffen et al.! Yes, I saw the NRG article citing us, and it's indeed great. Just absurd that they published a "communities" article with Closed Access :O The first gang of four that comes to my mind are the design patterns chaps who in contrary to trying to mitigate it,

Re: Jon says "thanks" ...

This is absolutely amazing Andreas! Thank you very much to everybody who contributed! Cheers, Matus To give an update here is a list of currently existing edam files in the Debian Med repositories (Git+SVN): $ find . -name "*.edam" | sort ./a/abacas.edam ./a/aegean.edam