Re: Is pigx-rnaseq ready to be uploaded?

2021-09-16 Thread Steffen Möller
On 15.09.21 23:27, Nilesh Patra wrote: Hi Steffen, On 9/15/21 5:31 PM, Steffen Möller wrote: I don't know about the software myself, if you could take a look and push what you deem sensible, that'd be very cool. Done. Also eliminated some lintian warnings. All dependencies have been

Re: Is pigx-rnaseq ready to be uploaded?

2021-09-15 Thread Nilesh Patra
Hi Steffen, On 9/15/21 5:31 PM, Steffen Möller wrote: >> I don't know about the software myself, if you could take a look and push >> what >> you deem sensible, that'd be very cool. > > Done. Also eliminated some lintian warnings. All dependencies have been > transitioned, so it cowbuilds now.

Re: Is pigx-rnaseq ready to be uploaded?

2021-09-15 Thread Steffen Möller
On 13.09.21 20:36, Nilesh Patra wrote: On 9/13/21 11:07 PM, Steffen Möller wrote: On 13.09.21 18:27, Nilesh Patra wrote: ... However, I see that you've added this line in d/ch: "hisat2 - upstream changed default genomic aligner" What would this mean? There's no upstream release for hisat2,

Re: Is pigx-rnaseq ready to be uploaded?

2021-09-13 Thread Nilesh Patra
On 9/13/21 11:07 PM, Steffen Möller wrote: > > On 13.09.21 18:27, Nilesh Patra wrote: >> r-cran-gprofiler2, last missing dep of pigx-rnaseq has been accepted some >> hours ago. > This is great news. Thank you for the upload. I just installed it. Was > not aware that gprofiler2 removes an already

Re: Is pigx-rnaseq ready to be uploaded?

2021-09-13 Thread Andreas Tille
On Mon, Sep 13, 2021 at 09:57:37PM +0530, Nilesh Patra wrote: > Hi Steffen, > > r-cran-gprofiler2, last missing dep of pigx-rnaseq has been accepted some > hours ago. > However, I see that you've added this line in d/ch: "hisat2 - upstream > changed default genomic aligner" > What would this