Hello,
On 2020-11-01 18:59, shruti gupta wrote:
> shruti@debian:~/LoRTIA$ LoRTIA -5 AGAGTACATGGG --five_score 16
> --check_in_soft 15 -3 AAA --three_score 18 -s poisson -f
> True ./test/test.sam ./output/ ./test/test_reads.fasta
> Sorting ./test/test.sam...
> Iterating over
Dear Shruti,
On Sun, Nov 01, 2020 at 10:29:26PM +0530, shruti gupta wrote:
> With your support I am able to install and run the LoRTIA package
I think we should settle with some common terminology. In Debian
terminology "package" refers to a "Debian package". While for instance
GNU R calls
Hi Everyone
With your support I am able to install and run the LoRTIA package
I have run one test file which is generating this output
shruti@debian:~/LoRTIA$ LoRTIA -5 AGAGTACATGGG --five_score 16
--check_in_soft 15 -3 AAA --three_score 18 -s poisson -f True
./test/test.sam
Hi Shruti Gupta,
First of all, are you using Debian unstable (a.k.a. sid)?
On 2020-10-30 16:07, shruti gupta wrote:
> Step 3 Install Anacondas for pandas Requirement already satisfied: pandas in
> ./.local/lib/python3.8/site-packages (1.1.3)
This does not look good. You should use dependencies
Hi Andrius, Med Team
Step 1 First I maked git clone
git clone https://github.com/zsolt-balazs/LoRTIA
Step 2 than I install dependencies
Bedtools shruti@debian:~$ sudo apt-get install bedtools
Reading package lists... Done
Building dependency tree
Reading state information... Done
bedtools is
Hi Shruti,
sorry for not responding more quickly - last week I was busy in real
life and most time offline. I wonder whether you want to join a
Mentoring of the Month project for LoRTIA packaging. Please have
a look here
https://salsa.debian.org/med-team/community/MoM/-/wikis/home
We can
Hi Shruti Gupta,
On 2020-10-26 09:59, shruti gupta wrote:
> Since I was interesting to working on the LoRTIA package, but I am not
> able to figure out right now what I have to do in this exactly.
> Can you please suggest the next steps.
Could you please explain how did you attempt to install
Hello Everyone
Since I was interesting to working on the LoRTIA package, but I am not
able to figure out right now what I have to do in this exactly.
Can you please suggest the next steps.
Regards
Shruti Gupta
On Fri, Oct 23, 2020 at 10:38 PM shruti gupta
wrote:
> Hi Med Team
> I am working
Hi Med Team
I am working on LoRTIA
I have installed all the dependencies as given in READ.md
- [bedtools] (tested v. 2.28) Make sure that `bedtools>
- [pandas] (tested v. 0.24.0 and up)
- [Biopython] (tested Release 1.73)
- [pysam] (tested v. 0.15.0)
- [scipy] (tested v. 1.2.2)
Not able to
Hello Everyone
I am working on LoRTIA
I have installed all the dependencies as given in READ.md
- [bedtools] (tested v. 2.28) Make sure that `bedtools>
- [pandas] (tested v. 0.24.0 and up)
- [Biopython] (tested Release 1.73)
- [pysam] (tested v. 0.15.0)
- [scipy] (tested v. 1.2.2)
Kindly
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