Re: Should we offer Debian Med workflow-containers?

2021-01-20 Thread Steffen Möller
Dear Olivier, dear Yaroslav, dear Alex, Thank you all for your kind and constructive replies - as expected :o) Am 18.01.21 um 12:30 schrieb olivier sallou: > On Sun, 2021-01-17 at 16:42 +0100, Steffen Möller wrote: >> Hello, >> >> Our HPC environment does not offer Docker, but Singularity >> ( >>

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread Andreas Tille
On Mon, Jan 18, 2021 at 01:27:08PM -0500, Yaroslav Halchenko wrote: > > You could join our Debian Med sprint and than we talk about this. > > added Feb 18-21 to my calendar... :-) > I will try to keep an eye on the > perspective schedule to see when container relevant discussion would > happen t

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread Yaroslav Halchenko
On Mon, 18 Jan 2021, Andreas Tille wrote: > Hi Yaroslav, > thanks a lot for the valuable information. > On Mon, Jan 18, 2021 at 09:15:16AM -0500, Yaroslav Halchenko wrote: > > May be would be of some help/information > You could join our Debian Med sprint and than we talk about this. added Feb

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread Andreas Tille
Hi Yaroslav, thanks a lot for the valuable information. On Mon, Jan 18, 2021 at 09:15:16AM -0500, Yaroslav Halchenko wrote: > May be would be of some help/information You could join our Debian Med sprint and than we talk about this. See you Andreas. -- http://fam-tille.de

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread Yaroslav Halchenko
On Mon, 18 Jan 2021, Alex Mestiashvili wrote: > But we have a great success with singularity definition files. Forgot also to mention a project, which is despite "neuro" in its name, is not that much "neuro": https://github.com/ReproNim/neurodocker/ Neurodocker is a command-line progra

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread Alex Mestiashvili
Hi Steffen, On 1/17/21 4:42 PM, Steffen Möller wrote: Hello, Our HPC environment does not offer Docker, but Singularity (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) is supported. I thought I should give it a shot. Is anybody using this already on this list? Best,

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread Yaroslav Halchenko
On Sun, 17 Jan 2021, Steffen Möller wrote: > Hello, > Our HPC environment does not offer Docker, but Singularity > (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) > is supported. I thought I should give it a shot. Is anybody using this > already on this list? FWIW,

Re: Should we offer Debian Med workflow-containers?

2021-01-18 Thread olivier sallou
On Sun, 2021-01-17 at 16:42 +0100, Steffen Möller wrote: > Hello, > > Our HPC environment does not offer Docker, but Singularity > ( > https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459 > ) > is supported. I thought I should give it a shot. Is anybody using > this > already

Should we offer Debian Med workflow-containers?

2021-01-17 Thread Steffen Möller
Hello, Our HPC environment does not offer Docker, but Singularity (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459) is supported. I thought I should give it a shot. Is anybody using this already on this list? Best, Steffen